Structure information

β2-adrenoceptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

4LDL

SPECIES

Homo sapiens

RESOLUTION

3.100

PREFERRED CHAIN

A

REFERENCE

10.1038/NATURE12572

PUBLICATION DATE

Sept. 25, 2013

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
hydroxybenzylisoproterenol W1109 3.28x28 TM3 hydrophobic
hydroxybenzylisoproterenol D1113 3.32x32 TM3 polar (charge-assisted hydrogen bond)
hydroxybenzylisoproterenol V1114 3.33x33 TM3 hydrophobic
hydroxybenzylisoproterenol V1114 3.33x33 TM3 Van der Waals
hydroxybenzylisoproterenol V1117 3.36x36 TM3 hydrophobic
hydroxybenzylisoproterenol V1117 3.36x36 TM3 Van der Waals
hydroxybenzylisoproterenol D1192 45.51x51 ECL2 polar (charge-assisted hydrogen bond)
hydroxybenzylisoproterenol F1193 45.52x52 ECL2 Van der Waals
hydroxybenzylisoproterenol F1193 45.52x52 ECL2 hydrophobic
hydroxybenzylisoproterenol S1203 5.42x43 TM5 polar (hydrogen bond)
hydroxybenzylisoproterenol S1203 5.42x43 TM5 Van der Waals
hydroxybenzylisoproterenol S1207 5.46x461 TM5 Van der Waals
hydroxybenzylisoproterenol S1207 5.46x461 TM5 polar (hydrogen bond)
hydroxybenzylisoproterenol F1289 6.51x51 TM6 Van der Waals
hydroxybenzylisoproterenol F1289 6.51x51 TM6 aromatic (edge-to-face)
hydroxybenzylisoproterenol F1290 6.52x52 TM6 hydrophobic
hydroxybenzylisoproterenol F1290 6.52x52 TM6 Van der Waals
hydroxybenzylisoproterenol N1293 6.55x55 TM6 Van der Waals
hydroxybenzylisoproterenol Y1308 7.35x34 TM7 hydrophobic
hydroxybenzylisoproterenol Y1308 7.35x34 TM7 Van der Waals
hydroxybenzylisoproterenol I1309 7.36x35 TM7 hydrophobic
hydroxybenzylisoproterenol I1309 7.36x35 TM7 Van der Waals
hydroxybenzylisoproterenol N1312 7.39x38 TM7 polar (hydrogen bond)
hydroxybenzylisoproterenol N1312 7.39x38 TM7 polar (hydrogen bond)
hydroxybenzylisoproterenol Y1316 7.43x42 TM7 polar (hydrogen bond)

Ligands

hydroxybenzylisoproterenol

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Residue Diagrams

V N G F V I A L V I L S M V I G M G V V 1 T S L A C A D L V M G A L V V P F G A A H 2 V C L T E I S A T V C L V D I S T W F E 3 A R V I I L M V W I V S G L T S F L P I 4 Y V F V M I V L P V Y F S V I S S A I A Y 5 G I I M G T F T L C W L P F F I V N I V 6 L P N F G S N V Y G I W N L L I Y V E 7
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ICL1 E R L Q ICL1ECL1 M W T F ECL1ICL2 P F K Y Q S L L ICL2ECL2 W Y R A T H Q E A I N C Y A N E T C C D F F T ECL2ICL3 G R F H V Q N L S Q V E Q D G R T G H G L R R S ICL3ECL3 D N L I ECL3N-term M G Q P G N G S A F L L A P N G S H A P D H D V T N-termC-term L R R S S L K A Y G N G Y S S N G N T G E Q S G Y H V E Q E K E N K L L C E D L P G T E D F V G H Q G T V P S D N I D S Q G R N C S T N D S L L C-term Q E R D E V W V V G M G I V M S L I V L A I V F G N V L V I T A I A K F T V T N Y F I T S L A C A D L V M G L A V V P F G A A H I L M K G N F W C E F W T S I D V L C V T A S I E T L C V I A V D R Y F A I T S T K N K A R V I I L M V W I V S G L T S F L P I Q M H N Q A Y A I A S S I V S F Y V P L V I M V F V Y S R V F Q E A K R Q L Q K I D K S E S K F C L K E H K A L K T L G I I M G T F T L C W L P F F I V N I V H V I Q R K E V Y I L L N W I G Y V N S G F N P L I Y C R S P D F Q E F R I A L L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
β2-adrenoceptor
TM3
3x28 3.28x28 W109
3x32 3.32x32 D113
3x33 3.33x33 V114
3x36 3.36x36 V117
ECL2
45x51 45.51x51 D192
45x52 45.52x52 F193
TM5
5x43 5.42x43 S203
5x461 5.46x461 S207
TM6
6x51 6.51x51 F289
6x52 6.52x52 F290
6x55 6.55x55 N293
TM7
7x34 7.35x34 Y308
7x35 7.36x35 I309
7x38 7.39x38 N312
7x42 7.43x42 Y316