PDB
4LDO
Resolution
3.2 Å
Released
Sept. 25, 2013
Receptor
β2
Class
A
Species
Homo sapiens
Ligand
(-)-adrenaline
Function
Agonist
Reference
10.1038/NATURE12572

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Ligand Amino Acid Generic Number Segment Interaction Type
(-)-adrenaline D1113 3.32x32 TM3 polar (charge-assisted hydrogen bond)
(-)-adrenaline V1114 3.33x33 TM3 hydrophobic
(-)-adrenaline V1114 3.33x33 TM3 Van der Waals
(-)-adrenaline V1117 3.36x36 TM3 Van der Waals
(-)-adrenaline V1117 3.36x36 TM3 hydrophobic
(-)-adrenaline F1193 45.52x52 ECL2 Van der Waals
(-)-adrenaline F1193 45.52x52 ECL2 hydrophobic
(-)-adrenaline S1203 5.42x43 TM5 polar (hydrogen bond)
(-)-adrenaline S1203 5.42x43 TM5 Van der Waals
(-)-adrenaline S1207 5.46x461 TM5 Van der Waals
(-)-adrenaline F1289 6.51x51 TM6 Van der Waals
(-)-adrenaline F1289 6.51x51 TM6 aromatic (edge-to-face)
(-)-adrenaline F1290 6.52x52 TM6 hydrophobic
(-)-adrenaline F1290 6.52x52 TM6 Van der Waals
(-)-adrenaline N1293 6.55x55 TM6 polar (hydrogen bond)
(-)-adrenaline N1293 6.55x55 TM6 Van der Waals
(-)-adrenaline N1312 7.39x38 TM7 polar (hydrogen bond)
(-)-adrenaline N1312 7.39x38 TM7 polar (hydrogen bond)
(-)-adrenaline Y1316 7.43x42 TM7 Van der Waals

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ICL1 E R L Q ICL1ECL1 M W T F ECL1ICL2 P F K Y Q S L L ICL2ECL2 W Y R A T H Q E A I N C Y A N E T C C D F F T ECL2ICL3 G R F H V Q N L S Q V E Q D G R T G H G L R R S ICL3ECL3 D N L I ECL3N-term M G Q P G N G S A F L L A P N G S H A P D H D V T N-termC-term L R R S S L K A Y G N G Y S S N G N T G E Q S G Y H V E Q E K E N K L L C E D L P G T E D F V G H Q G T V P S D N I D S Q G R N C S T N D S L L C-term Q E R D E V W V V G M G I V M S L I V L A I V F G N V L V I T A I A K F T V T N Y F I T S L A C A D L V M G L A V V P F G A A H I L M K G N F W C E F W T S I D V L C V T A S I E T L C V I A V D R Y F A I T S T K N K A R V I I L M V W I V S G L T S F L P I Q M H N Q A Y A I A S S I V S F Y V P L V I M V F V Y S R V F Q E A K R Q L Q K I D K S E S K F C L K E H K A L K T L G I I M G T F T L C W L P F F I V N I V H V I Q R K E V Y I L L N W I G Y V N S G F N P L I Y C R S P D F Q E F R I A L L C
Helix box plot — Download: PNG | SVG V N G F V I A L V I L S M V I G M G V V 1 T S L A C A D L V M G A L V V P F G A A H 2 V C L T E I S A T V C L V D I S T W F E 3 A R V I I L M V W I V S G L T S F L P I 4 Y V F V M I V L P V Y F S V I S S A I A Y 5 G I I M G T F T L C W L P F F I V N I V 6 L P N F G S N V Y G I W N L L I Y V E 7

GPCRdb(A)
GPCRdb(A)
β2-adrenoceptor
TM3
3x32 3.32x32 D113
3x33 3.33x33 V114
3x36 3.36x36 V117
ECL2
45x52 45.52x52 F193
TM5
5x43 5.42x43 S203
5x461 5.46x461 S207
TM6
6x51 6.51x51 F289
6x52 6.52x52 F290
6x55 6.55x55 N293
TM7
7x38 7.39x38 N312
7x42 7.43x42 Y316