PDB
4Z36
Resolution
2.9 Å
Released
June 3, 2015
Receptor
LPA1
Class
A
Species
Homo sapiens
Ligand
ONO-3080573
Function
Antagonist
Reference
10.1016/J.CELL.2015.06.002

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Ligand Amino Acid Generic Number Segment Interaction Type
ONO-3080573 T109 ECL1 polar (hydrogen bond)
ONO-3080573 T109 ECL1 Van der Waals
ONO-3080573 Q125 3.29x29 TM3 Van der Waals
ONO-3080573 Q125 3.29x29 TM3 polar (hydrogen bond)
ONO-3080573 I128 3.32x32 TM3 hydrophobic
ONO-3080573 I128 3.32x32 TM3 Van der Waals
ONO-3080573 D129 3.33x33 TM3 Van der Waals
ONO-3080573 M198 ECL2 Van der Waals
ONO-3080573 M198 ECL2 hydrophobic
ONO-3080573 W210 5.43x43 TM5 hydrophobic
ONO-3080573 W210 5.43x43 TM5 Van der Waals
ONO-3080573 W271 6.48x48 TM6 Van der Waals
ONO-3080573 W271 6.48x48 TM6 hydrophobic
ONO-3080573 G274 6.51x51 TM6 Van der Waals
ONO-3080573 L278 6.55x55 TM6 Van der Waals
ONO-3080573 L278 6.55x55 TM6 hydrophobic
ONO-3080573 E293 7.35x34 TM7 polar (charge-assisted hydrogen bond)
ONO-3080573 K294 7.36x35 TM7 polar (charge-assisted hydrogen bond)
ONO-3080573 F296 7.38x37 TM7 hydrophobic
ONO-3080573 F296 7.38x37 TM7 Van der Waals
ONO-3080573 L297 7.39x38 TM7 hydrophobic
ONO-3080573 L297 7.39x38 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 R R F H ICL1ECL1 T G P N T R R L ECL1ICL2 M Q L H T R M ICL2ECL2 W N C I C D I E N C S N M A P L Y ECL2ICL3 R H S S ICL3ECL3 P Q C ECL3N-term M A A I S T S I P V I S Q P Q F T A M N E P Q C F Y N E S I A F F Y N R S G K H L A T E W N N-termC-term C Q R S E N P T G P T E G S D R S A S S L N H T I L A G V H S N D H S V V C-term T V S K L V M G L G I T V C I F I M L A N L L V M V A I Y V N F P I Y Y L M A N L A A A D F F A G L A Y F Y L M F N T V S T W L L R Q G L I D T S L T A S V A N L L A I A I E R H I T V F R S N R R V V V V I V V I W T M A I V M G A I P S V G S D S Y L V F W A I F N L V T F V V M V V L Y A H I F G Y V R Q R T M R M S G P R R N R D T M M S L L K T V V I V L G A F I I C W T P G L V L L L L D V C C D V L A Y E K F F L L L A E F N S A M N P I I Y S Y R D K E F R Q M S A T I L C
Helix box plot — Download: PNG | SVG L N A L M I F I C V T I G L G M V L K S 1 A N L A A A D F F A G L A Y F Y L M F N 2 A L L N A V S A T L S T D I L G Q R L L 3 V V V V I V V I W T M A I V M G A I P S 4 Y L V V M V V F T V L N F I A W F V L Y 5 V I V L G A F I I C W T P G L V L L L L 6 I P N M A S N F E A L L L F F K E Y A 7

GPCRdb(A)
GPCRdb(A)
LPA1 receptor
TM3
3x29 3.29x29 Q125
3x32 3.32x32 I128
3x33 3.33x33 D129
TM5
5x43 5.43x43 W210
TM6
6x48 6.48x48 W271
6x51 6.51x51 G274
6x55 6.55x55 L278
TM7
7x34 7.35x34 E293
7x35 7.36x35 K294
7x37 7.38x37 F296
7x38 7.39x38 L297