PDB
5TE5
Resolution
4.0 Å
Released
March 15, 2017
Receptor
Rhodopsin
Class
A
Species
Bos taurus
Ligand
Function
10,20-Methanoretinal
Inverse agonist
Reference
10.1073/PNAS.1617446114

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
10,20-Methanoretinal E113 3.28x28 TM3 hydrophobic
10,20-Methanoretinal A117 3.32x32 TM3 hydrophobic
10,20-Methanoretinal T118 3.33x33 TM3 Van der Waals
10,20-Methanoretinal E122 3.37x37 TM3 Van der Waals
10,20-Methanoretinal E181 ECL2 Van der Waals
10,20-Methanoretinal S186 ECL2 Van der Waals
10,20-Methanoretinal C187 45.50x50 ECL2 Van der Waals
10,20-Methanoretinal G188 45.51x51 ECL2 Van der Waals
10,20-Methanoretinal I189 45.52x52 ECL2 Van der Waals
10,20-Methanoretinal M207 5.42x43 TM5 hydrophobic
10,20-Methanoretinal F208 5.43x44 TM5 hydrophobic
10,20-Methanoretinal H211 5.46x461 TM5 Van der Waals
10,20-Methanoretinal F212 5.47x47 TM5 hydrophobic
10,20-Methanoretinal W265 6.48x48 TM6 hydrophobic
10,20-Methanoretinal Y268 6.51x51 TM6 hydrophobic
10,20-Methanoretinal A292 7.39x38 TM7 Van der Waals
10,20-Methanoretinal K296 7.43x42 TM7 covalent bond

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 K K L R ICL1ECL1 Y F V F ECL1ICL2 P M S N F R F ICL2ECL2 W S R Y I P E G M Q C S C G I D Y Y T P H E E T ECL2ICL3 Q E ICL3ECL3 Q G S D F ECL3N-term M N G T E G P N F Y V P F S N K T G V V R S P F E A P Q Y Y L A N-termC-term C G K N P L G D D E A S T T V S K T E T S Q V A P A C-term E P W Q F S M L A A Y M F L L I M L G F P I N F L T L Y V T V Q H T P L N Y I L L N L A V A D L F M V F G G F T T T L Y T S L H G G P T G C N L E G F F A T L G G E I A L W S L V V L A I E R Y V V V C K G E N H A I M G V A F T W V M A L A C A A P P L V G N N E S F V I Y M F V V H F I I P L I V I F F C Y G Q L V F T V K E A A A Q Q S A T T Q K A E K E V T R M V I I M V I A F L I C W L P Y A G V A F Y I F T H G P I F M T I P A F F A K T S A V Y N P V I Y I M M N K Q M V T F R N C T L C
Helix box plot — Download: PNG | SVG F N I P F G L M I L L F M Y A A L M S F 1 L N L A V A D L F M V G F G F T T T L Y T 2 V V L S W L A I E G G L T A F F G E L N 3 A I M G V A F T W V M A L A C A A P P L 4 Y C F F I V I L P I I F H V V F M Y I V F 5 I I M V I A F L I C W L P Y A G V A F Y 6 V P N Y V A S T K A F F A P I T M F I 7

GPCRdb(A)
GPCRdb(A)
Rhodopsin
TM3
3x28 3.28x28 E113
3x32 3.32x32 A117
3x33 3.33x33 T118
3x37 3.37x37 E122
ECL2
45x50 45.50x50 C187
45x51 45.51x51 G188
45x52 45.52x52 I189
TM5
5x43 5.42x43 M207
5x44 5.43x44 F208
5x461 5.46x461 H211
5x47 5.47x47 F212
TM6
6x48 6.48x48 W265
6x51 6.51x51 Y268
TM7
7x38 7.39x38 A292
7x42 7.43x42 K296