Structure information

PTH1 receptor

PROTEIN CLASS

Class B1 (Secretin)

PDB CODE

6NBF

SPECIES

Homo sapiens

RESOLUTION

3.000

PREFERRED CHAIN

R

REFERENCE

10.1126/SCIENCE.AAV7942

PUBLICATION DATE

April 17, 2019

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
Long-acting parathyroid hormone analog V31 N-term hydrophobic
Long-acting parathyroid hormone analog M32 N-term polar (hydrogen bond with backbone)
Long-acting parathyroid hormone analog M32 N-term Van der Waals
Long-acting parathyroid hormone analog K34 N-term Van der Waals
Long-acting parathyroid hormone analog D113 N-term Van der Waals
Long-acting parathyroid hormone analog I115 N-term Van der Waals
Long-acting parathyroid hormone analog I115 N-term hydrophobic
Long-acting parathyroid hormone analog Y136 N-term Van der Waals
Long-acting parathyroid hormone analog D137 N-term Van der Waals
Long-acting parathyroid hormone analog F138 N-term hydrophobic
Long-acting parathyroid hormone analog F138 N-term Van der Waals
Long-acting parathyroid hormone analog R162 N-term Van der Waals
Long-acting parathyroid hormone analog A165 N-term polar (hydrogen bond with backbone)
Long-acting parathyroid hormone analog A165 N-term Van der Waals
Long-acting parathyroid hormone analog N166 N-term Van der Waals
Long-acting parathyroid hormone analog Y167 N-term Van der Waals
Long-acting parathyroid hormone analog Y167 N-term hydrophobic
Long-acting parathyroid hormone analog R181 1.33x33 TM1 Van der Waals
Long-acting parathyroid hormone analog F184 1.36x36 TM1 Van der Waals
Long-acting parathyroid hormone analog F184 1.36x36 TM1 aromatic (edge-to-face)
Long-acting parathyroid hormone analog Y195 1.47x47 TM1 polar (hydrogen bond)
Long-acting parathyroid hormone analog R233 2.60x60 TM2 polar (charge-assisted hydrogen bond)
Long-acting parathyroid hormone analog I237 2.64x64 TM2 Van der Waals
Long-acting parathyroid hormone analog L244 2.71x71 TM2 Van der Waals
Long-acting parathyroid hormone analog L244 2.71x71 TM2 hydrophobic
Long-acting parathyroid hormone analog F288 3.36x36 TM3 hydrophobic
Long-acting parathyroid hormone analog F288 3.36x36 TM3 Van der Waals
Long-acting parathyroid hormone analog L292 3.40x40 TM3 Van der Waals
Long-acting parathyroid hormone analog L292 3.40x40 TM3 hydrophobic
Long-acting parathyroid hormone analog D353 45.52x52 ECL2 polar (charge-assisted hydrogen bond)
Long-acting parathyroid hormone analog D353 45.52x52 ECL2 polar (hydrogen bond with backbone)
Long-acting parathyroid hormone analog L354 ECL2 hydrophobic
Long-acting parathyroid hormone analog L354 ECL2 Van der Waals
Long-acting parathyroid hormone analog S355 ECL2 Van der Waals
Long-acting parathyroid hormone analog S355 ECL2 polar (hydrogen bond with backbone)
Long-acting parathyroid hormone analog Q364 5.40x40 TM5 Van der Waals
Long-acting parathyroid hormone analog Q364 5.40x40 TM5 polar (hydrogen bond)
Long-acting parathyroid hormone analog L368 5.44x44 TM5 hydrophobic
Long-acting parathyroid hormone analog M425 ECL3 polar (hydrogen bond with backbone)
Long-acting parathyroid hormone analog M425 ECL3 Van der Waals
Long-acting parathyroid hormone analog T427 ECL3 Van der Waals
Long-acting parathyroid hormone analog T427 ECL3 polar (hydrogen bond with backbone)
Long-acting parathyroid hormone analog Y429 ECL3 hydrophobic
Long-acting parathyroid hormone analog Y429 ECL3 Van der Waals
Long-acting parathyroid hormone analog T430 ECL3 Van der Waals
Long-acting parathyroid hormone analog V432 ECL3 Van der Waals
Long-acting parathyroid hormone analog W437 7.35x34 TM7 Van der Waals
Long-acting parathyroid hormone analog W437 7.35x34 TM7 hydrophobic
Long-acting parathyroid hormone analog Q440 7.38x37 TM7 Van der Waals
Long-acting parathyroid hormone analog Q440 7.38x37 TM7 polar (hydrogen bond)
Long-acting parathyroid hormone analog M441 7.39x38 TM7 hydrophobic
Long-acting parathyroid hormone analog M441 7.39x38 TM7 Van der Waals
Long-acting parathyroid hormone analog E444 7.42x41 TM7 Van der Waals
Long-acting parathyroid hormone analog M445 7.43x42 TM7 hydrophobic
Long-acting parathyroid hormone analog M445 7.43x42 TM7 Van der Waals

Ligands

Long-acting parathyroid hormone analog

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Residue Diagrams

T L S A L S V S Y G V T Y I M G L R D F 1 M H L F L S F M L R A V S I F V K D A V 2 V L I W Y Y N T A L F Y L F F T V A V R 3 Y L W G F T V G F W G L P A V F V A V W V 4 F L I F N L V I S A L I P V Q I I W K K N 5 L V L M P L F G V H Y I V F M A T 6 I A V F F G Q F S N F L M E Y H M Q V 7
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ICL1 R R L H ICL1ECL1 L D E A E R L T E E E L R A I A Q A P P P P A T A A A ECL1ICL2 A F F ICL2ECL2 N T G C W D L S S ECL2ICL3 R E T N A G R C ICL3ECL3 P Y T E V S ECL3N-term M G T A R I A P G L A L L L C C P V L S S A Y A L V D A D D V M T K E E Q I F L L H R A Q A Q C E K R L K E V L Q R P A S I M E S D K G W T S A S T S G K P R K D K A S G K L Y P E S E E D K E A P T G S R Y R G R P C L P E W D H I L C W P L G A P G E V V A V P C P D Y I Y D F N H K G H A Y R R C D R N G S W E L V P G H N R T W A N Y S E C V K N-termC-term S G S S S Y S Y G P M V S H T S V T N V G P R V G L G L P L S P R L L P T A T T N G H P Q L P G H A K P G T P A L E T L E T T P P A M A A P K D D G F L N G S C S G L D E E A S G P E R P P A L L Q E E W E T V M C-term F L T N E T R E R E V F D R L G M I Y T V G Y S V S L A S L T V A V L I L A Y F C T R N Y I H M H L F L S F M L R A V S I F V K D A V L Y S G A T G Y A G C R V A V T F F L Y F L A T N Y Y W I L V E G L Y L H S L I F M S E K K Y L W G F T V F G W G L P A V F V A V W V S V R A T L A G N K K W I I Q V P I L A S I V L N F I L F I N I V R V L A T K L D T R Q Q Y R K L L K S T L V L M P L F G V H Y I V F M A T G T L W Q V Q M H Y E M L F N S F Q G F F V A I I Y C F C N G E I K K W T L K R K V Q A E S W S R A L D F A R
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Residue Table


GPCRdb(A)
GPCRdb(B)
PTH1 receptor
TM1
1x29 1.33x33 R181
1x32 1.36x36 F184
1x43 1.47x47 Y195
TM2
2x53 2.60x60 R233
2x57 2.64x64 I237
2x64 2.71x71 L244
TM3
3x32 3.36x36 F288
3x36 3.40x40 L292
ECL2
45x52 45.52x52 D353
TM5
5x44 5.40x40 Q364
5x48 5.44x44 L368
TM7
7x30 7.35x34 W437
7x33 7.38x37 Q440
7x34 7.39x38 M441
7x37 7.42x41 E444
7x38 7.43x42 M445