PDB
6PT2
Resolution
2.8 Å
Released
Dec. 11, 2019
Receptor
δ
Class
A
Species
Homo sapiens
Ligand
CHEMBL3408735
Function
Agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL3408735 W114 23.50x50 ECL1 hydrophobic
CHEMBL3408735 Y129 3.33x33 TM3 hydrophobic
CHEMBL3408735 M132 3.36x36 TM3 hydrophobic
CHEMBL3408735 K214 5.39x40 TM5 Van der Waals
CHEMBL3408735 K214 5.39x40 TM5 polar (hydrogen bond with backbone)
CHEMBL3408735 V217 5.42x43 TM5 Van der Waals
CHEMBL3408735 V217 5.42x43 TM5 hydrophobic
CHEMBL3408735 W274 6.48x48 TM6 hydrophobic
CHEMBL3408735 W274 6.48x48 TM6 Van der Waals
CHEMBL3408735 I277 6.51x51 TM6 Van der Waals
CHEMBL3408735 I277 6.51x51 TM6 hydrophobic
CHEMBL3408735 H278 6.52x52 TM6 polar (hydrogen bond)
CHEMBL3408735 F280 6.54x54 TM6 hydrophobic
CHEMBL3408735 F280 6.54x54 TM6 Van der Waals
CHEMBL3408735 V281 6.55x55 TM6 hydrophobic
CHEMBL3408735 V281 6.55x55 TM6 Van der Waals
CHEMBL3408735 W284 6.58x58 TM6 polar (hydrogen bond)
CHEMBL3408735 I289 ECL3 Van der Waals
CHEMBL3408735 R291 ECL3 Van der Waals
CHEMBL3408735 L300 7.35x34 TM7 hydrophobic
CHEMBL3408735 L300 7.35x34 TM7 Van der Waals
CHEMBL3408735 I304 7.39x38 TM7 hydrophobic
CHEMBL3408735 I304 7.39x38 TM7 Van der Waals
CHEMBL3408735 Y308 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 T K M K ICL1ECL1 T W P F ECL1ICL2 P V K A L D F R ICL2ECL2 V T R P R D G A V V C M L Q F P S ECL2ICL3 R L L S G ICL3ECL3 D I D R R ECL3N-term M E P A P S A G A E L Q P P L F A N A S D A Y P S A C P S A G A N A S G P P N-termC-term P C G R P D P S S F S R A R E A T A R E R V T A C T P S D G P G G G A A A C-term G A R S A S S L A L A I A I T A L Y S A V C A V G L L G N V L V M F G I V R Y T A T N I Y I F N L A L A D A L A T S T L P F Q S A K Y L M E G E L L C K A V L S I D Y Y N M F T S I F T L T M M S V D R Y I A V C H T P A K A K L I N I C I W V L A S G V G V P I M V M A P S W Y W D T V T K I C V F L F A F V V P I L I I T V C Y G L M L L R L R S V S K E K D R S L R R I T R M V L V V V G A F V V C W A P I H I F V I V W T L V D P L V V A A L H L C I A L G Y A N S S L N P V L Y A F L D E N F R Q F K R C L C R K
Helix box plot — Download: PNG | SVG V N G L L G V A C V A S Y L A T I A I A 1 F N L A L A D A L A T S T L P F Q S A K 2 M T L T F I S T F M N Y Y D I S L V A K 3 A K L I N I C I W V L A S G V G V P I M 4 Y C V T I I L I P V V F A F L F V C I K T 5 L V V V G A F V V C W A P I H I F V I V 6 V P N L S S N A Y G L A I C L H L A A 7

GPCRdb(A)
GPCRdb(A)
δ receptor
ECL1
23x50 23.50x50 W114
TM3
3x33 3.33x33 Y129
3x36 3.36x36 M132
TM5
5x40 5.39x40 K214
5x43 5.42x43 V217
TM6
6x48 6.48x48 W274
6x51 6.51x51 I277
6x52 6.52x52 H278
6x54 6.54x54 F280
6x55 6.55x55 V281
6x58 6.58x58 W284
TM7
7x34 7.35x34 L300
7x38 7.39x38 I304
7x42 7.43x42 Y308