Structure information

CCR6

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

6WWZ

SPECIES

Homo sapiens

RESOLUTION

3.340

PREFERRED CHAIN

R

REFERENCE

10.1038/S41467-020-16820-6

PUBLICATION DATE

June 24, 2020

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
CCL20 Y27 N-term hydrophobic
CCL20 E32 N-term polar (charge-assisted hydrogen bond)
CCL20 M33 N-term hydrophobic
CCL20 M33 N-term Van der Waals
CCL20 L35 N-term Van der Waals
CCL20 L35 N-term polar (hydrogen bond with backbone)
CCL20 C36 N-term Van der Waals
CCL20 L38 N-term hydrophobic
CCL20 L38 N-term Van der Waals
CCL20 R42 1.28x28 TM1 polar (charge-assisted hydrogen bond)
CCL20 Y189 ECL2 hydrophobic
CCL20 Y189 ECL2 Van der Waals
CCL20 Q192 ECL2 polar (hydrogen bond)
CCL20 Q192 ECL2 Van der Waals
CCL20 C197 45.50x50 ECL2 polar (hydrogen bond with backbone)
CCL20 C197 45.50x50 ECL2 Van der Waals
CCL20 E198 45.51x51 ECL2 polar (charge-assisted hydrogen bond)
CCL20 K200 ECL2 polar (charge-assisted hydrogen bond)
CCL20 Y201 ECL2 polar (hydrogen bond with backbone)
CCL20 Y201 ECL2 Van der Waals
CCL20 K211 5.35x36 TM5 polar (charge-assisted hydrogen bond)
CCL20 L281 ECL3 Van der Waals
CCL20 M284 ECL3 polar (hydrogen bond with backbone)
CCL20 M284 ECL3 Van der Waals
CCL20 R286 ECL3 polar (charge-assisted hydrogen bond)
CCL20 S287 7.24x23 TM7 Van der Waals
CCL20 C288 7.25x24 TM7 Van der Waals
CCL20 G295 7.32x31 TM7 Van der Waals

Ligands

CCL20

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Residue Diagrams

I N G L L G F V C I L S Y A I P V F L R 1 L N M A I A D I L F V L T L P F W A V S 2 C T L L L M G C N F N I A Y I G K L L K 3 S K I I C L V V W G L S V I I S S S T 4 Y C F I M F M L P I F F G F L L E L G L M 5 I A V V L V F L A C Q I P H N M V L L V 6 V P N L C C H L F A L V E T V T K T Y 7
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ICL1 K K A R ICL1ECL1 A W V F ECL1ICL2 A T K S F R L R S R ICL2ECL2 Q K Y N T Q G S D V C E P K Y Q T V S E ECL2ICL3 Q N ICL3ECL3 N R ECL3N-term M S G E S M N F S D V F D S S E D Y F V S V N T S Y Y S V D S E M L L C S L N-termC-term C V R R K Y K S S G F S C A G R Y S E N I S R Q T S E T A D N D N A S S F T M C-term Q E V R Q F S R L F V P I A Y S L I C V F G L L G N I L V V I T F A F Y S M T D V Y L L N M A I A D I L F V L T L P F W A V S H A T G S N A T C K L L K G I Y A I N F N C G M L L L T C I S M D R Y I A I V Q T L P R S K I I C L V V W G L S V I I S S S T F V F N P I R W K L L M L G L E L L F G F F I P L M F M I F C Y T F I V K T L V Q A S K R H K A I R V I I A V V L V F L A C Q I P H N M V L L V T A A N L G K M S C Q S E K L I G Y T K T V T E V L A F L H C C L N P V L Y A F I G Q K F L K L W F R N Y I L K D
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Residue Table


GPCRdb(A)
GPCRdb(A)
CCR6
TM1
1x28 1.28x28 R42
ECL2
45x50 45.50x50 C197
45x51 45.51x51 E198
TM5
5x36 5.35x36 K211
TM7
7x23 7.24x23 S287
7x24 7.25x24 C288
7x31 7.32x31 G295