PDB
7CFM
Resolution
3.0 Å
Released
Sept. 9, 2020
Receptor
GPBA
Class
A
Species
Homo sapiens
Ligand
CHEMBL2331646
Function
Agonist
Reference
10.1038/S41586-020-2569-1

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Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL2331646 L71 2.60x60 TM2 hydrophobic
CHEMBL2331646 L74 2.63x63 TM2 hydrophobic
CHEMBL2331646 W75 ECL1 hydrophobic
CHEMBL2331646 Y89 3.29x29 TM3 polar (hydrogen bond with backbone)
CHEMBL2331646 Y89 3.29x29 TM3 Van der Waals
CHEMBL2331646 P92 3.32x32 TM3 Van der Waals
CHEMBL2331646 F96 3.36x36 TM3 hydrophobic
CHEMBL2331646 F96 3.36x36 TM3 Van der Waals
CHEMBL2331646 L166 5.39x40 TM5 hydrophobic
CHEMBL2331646 L166 5.39x40 TM5 Van der Waals
CHEMBL2331646 E169 5.42x43 TM5 Van der Waals
CHEMBL2331646 L174 5.47x47 TM5 Van der Waals
CHEMBL2331646 L174 5.47x47 TM5 hydrophobic
CHEMBL2331646 Y240 6.51x51 TM6 Van der Waals
CHEMBL2331646 Y240 6.51x51 TM6 polar (hydrogen bond)
CHEMBL2331646 S247 6.58x58 TM6 Van der Waals
CHEMBL2331646 Y251 6.62x62 TM6 hydrophobic
CHEMBL2331646 Y251 6.62x62 TM6 Van der Waals
CHEMBL2331646 S270 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 R R L R ICL1ECL1 W N Q S R R ECL1ICL2 P L Q P P G ICL2ECL2 W N H W T P G A N C S S Q A I F ECL2ICL3 R D E P ICL3ECL3 R P P L ECL3N-term M T P N S T G E V P S P I N-termC-term R C L Q G L W G R A S R D S P G P S I A Y H P S S Q S S V D L D L N C-term P K G A L G L S L A L A S L I I T A N L L L A L G I A W D S P P A G C F F L S L L L A G L L T G L A L P T L P G L G Y W S C L L V Y L A P N F S F L S L L A N L L L V H G E R Y M A V L R S I R L A L L L T W A G P L L F A S L P A L G P A P Y L Y L E V Y G L L L P A V G A A A F L S V R V L A T A H R Q L Q D I C R L E R A V C S A L A R A L T W R Q A R A Q A G A M L L F G L C W G P Y V A T L L L S V L A Y E Q G P G T L L S L L S L G S A S A A A V P V A M G L G D Q R W R A Y T A P A A Q
Helix box plot — Download: PNG | SVG L N A T I I L S A L A L S L G L A G K P 1 L S L L L A G L L T G L A L P T L P G L 2 L L L N A L L S L F S F N P A L Y V L L 3 I R L A L L L T W A G P L L F A S L P A 4 S L F A A A G V A P L L L G Y V E L Y L Y 5 A G A M L L F G L C W G P Y V A T L L L 6 V P V A A A S A S G L S L L S L L T G 7

GPCRdb(A)
GPCRdb(A)
GPBA receptor
TM2
2x60 2.60x60 L71
2x63 2.63x63 L74
TM3
3x29 3.29x29 Y89
3x32 3.32x32 P92
3x36 3.36x36 F96
TM5
5x40 5.39x40 L166
5x43 5.42x43 E169
5x47 5.47x47 L174
TM6
6x51 6.51x51 Y240
6x58 6.58x58 S247
6x62 6.62x62 Y251
TM7
7x42 7.43x42 S270