PDB
7EW2
Resolution
3.1 Å
Released
Sept. 29, 2021
Receptor
S1P3
Class
A
Species
Homo sapiens
Ligand
(S)-FTY720-phosphate
Function
Agonist
Reference
10.1038/S41422-021-00567-W

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Ligand Amino Acid Generic Number Segment Interaction Type
(S)-FTY720-phosphate Y22 N-term polar (hydrogen bond)
(S)-FTY720-phosphate Y22 N-term Van der Waals
(S)-FTY720-phosphate R31 N-term polar (charge-assisted hydrogen bond)
(S)-FTY720-phosphate N95 2.60x60 TM2 Van der Waals
(S)-FTY720-phosphate S99 ECL1 polar (hydrogen bond)
(S)-FTY720-phosphate S99 ECL1 Van der Waals
(S)-FTY720-phosphate S99 ECL1 polar (hydrogen bond with backbone)
(S)-FTY720-phosphate T103 23.50x50 ECL1 Van der Waals
(S)-FTY720-phosphate T103 23.50x50 ECL1 polar (hydrogen bond)
(S)-FTY720-phosphate R114 3.28x28 TM3 Van der Waals
(S)-FTY720-phosphate E115 3.29x29 TM3 polar (charge-assisted hydrogen bond)
(S)-FTY720-phosphate M118 3.32x32 TM3 hydrophobic
(S)-FTY720-phosphate M118 3.32x32 TM3 Van der Waals
(S)-FTY720-phosphate F119 3.33x33 TM3 hydrophobic
(S)-FTY720-phosphate L122 3.36x36 TM3 hydrophobic
(S)-FTY720-phosphate L122 3.36x36 TM3 Van der Waals
(S)-FTY720-phosphate L189 ECL2 hydrophobic
(S)-FTY720-phosphate L189 ECL2 Van der Waals
(S)-FTY720-phosphate F260 6.52x52 TM6 hydrophobic
(S)-FTY720-phosphate F263 6.55x55 TM6 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 N K F H ICL1ECL1 G K K T F S L ECL1ICL2 M R P Y D A N ICL2ECL2 W N C L H N L P D C S T I L P L Y ECL2ICL3 V A ICL3ECL3 R V Q A C ECL3N-term M A T A L P P R L Q P V R G N E T L R E H Y Q Y V G K L A G R L K E A S E G N-termC-term N C L V R G R G A R A S P I Q P A L D P S R S K S S S S N N S S H S P K V K E D L P H T A P S S C I M D K N A A L Q N G I F C N C-term S T L T T V L F L V I C S F I V L E N L M V L I A I W K N N R M Y F F I G N L A L C D L L A G I A Y K V N I L M S S P T V W F L R E G S M F V A L G A S T C S L L A I A I E R H L T M I K K R H R V F L L I G M C W L I A F T L G A L P I L G S K K Y I A F C I S I F T A I L V T I V I L Y A R I Y F L V K S S S R K N H N N S E R S M A L L R T V V I V V S V F I A C W S P L F I L F L I D V A C P I L F K A Q W F I V L A V L N S A M N P V I Y T L A S K E F F R M R R A L V C
Helix box plot — Download: PNG | SVG L N E L V I F S C I V L F L V T T L T S 1 G N L A L C D L L A G I A Y K V N I L M 2 A L L S C T S A G L A V F M S G E R L F 3 V F L L I G M C W L I A F T L G A L P I 4 Y L I V I T V L I A T F I S I C F A I Y 5 V I V V S V F I A C W S P L F I L F L I 6 V P N M A S N L V A L V I F W Q A K F 7

GPCRdb(A)
GPCRdb(A)
S1P3 receptor
TM2
2x60 2.60x60 N95
ECL1
23x50 23.50x50 T103
TM3
3x28 3.28x28 R114
3x29 3.29x29 E115
3x32 3.32x32 M118
3x33 3.33x33 F119
3x36 3.36x36 L122
TM6
6x52 6.52x52 F260
6x55 6.55x55 F263