PDB
7JV5
Resolution
3.0 Å
Released
Feb. 24, 2021
Receptor
D1
Class
A
Species
Homo sapiens
Ligand
SKF-81297
Function
Agonist
Reference
10.1016/J.CELL.2021.01.027

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Ligand Amino Acid Generic Number Segment Interaction Type
SKF-81297 D103 3.32x32 TM3 polar (charge-assisted hydrogen bond)
SKF-81297 I104 3.33x33 TM3 hydrophobic
SKF-81297 S107 3.36x36 TM3 Van der Waals
SKF-81297 S188 45.52x52 ECL2 Van der Waals
SKF-81297 L190 ECL2 hydrophobic
SKF-81297 L190 ECL2 Van der Waals
SKF-81297 S198 5.42x43 TM5 polar (hydrogen bond with backbone)
SKF-81297 S198 5.42x43 TM5 polar (hydrogen bond)
SKF-81297 S199 5.43x44 TM5 Van der Waals
SKF-81297 S202 5.46x461 TM5 Van der Waals
SKF-81297 F288 6.51x51 TM6 aromatic (edge-to-face)
SKF-81297 F288 6.51x51 TM6 Van der Waals
SKF-81297 F289 6.52x52 TM6 hydrophobic
SKF-81297 F289 6.52x52 TM6 Van der Waals
SKF-81297 N292 6.55x55 TM6 polar (hydrogen bond)
SKF-81297 N292 6.55x55 TM6 Van der Waals
SKF-81297 F313 7.35x34 TM7 hydrophobic
SKF-81297 F313 7.35x34 TM7 Van der Waals

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ICL1 R H L R S ICL1ECL1 F W P F ECL1ICL2 P F R Y E R K M ICL2ECL2 W H K A K P T S P S D G N A T S L A E T I D N C D S S L ECL2ICL3 T T T G N G K P V E C S Q P E S S F ICL3ECL3 G S G E T Q P F C I ECL3N-term M R T L N T S A M D G T G L V V E R D F N-termC-term C Y R L C P A T N N A I E T V S I N N N G A A M F S S H H E P R G S I S K E C N L V Y L I P H A V G S S E D L K K E E A A G I A R P L E K L S P A L S V I L D Y D T D V S L E K I Q P I T Q N G Q H P T C-term S V R I L T A C F L S L L I L S T L L G N T L V C A A V I R F K V T N F F V I S L A V S D L L V A V L V M P W K A V A E I A G G S F C N I W V A F D I M C S T A S I L N L C V I S V D R Y W A I S S T P K A A F I L I S V A W T L S V L I S F I P V Q L S S R T Y A I S S S V I S F Y I P V A I M I V T Y T R I Y R I A Q K Q I R R I A A L E R A A V H A K N C Q K M S F K R E T K V L K T L S V I M G V F V C C W L P F F I L N C I L P F C D S N T F D V F V W F G W A N S S L N P I I Y A F N A D F S T F R K A L L G
Helix box plot — Download: PNG | SVG T N G L L T S L I L L S L F C A T L I R 1 I S L A V S D L L V A L V V M P W K A V A 2 V C L N L I S A T S C M I D F A V W I N 3 A F I L I S V A W T L S V L I S F I P V 4 Y T V I M I A V P I Y F S I V S S S I A Y 5 S V I M G V F V C C W L P F F I L N C I 6 I P N L S S N A W G F W V F V D F T N 7

GPCRdb(A)
GPCRdb(A)
D1 receptor
TM3
3x32 3.32x32 D103
3x33 3.33x33 I104
3x36 3.36x36 S107
ECL2
45x52 45.52x52 S188
TM5
5x43 5.42x43 S198
5x44 5.43x44 S199
5x461 5.46x461 S202
TM6
6x51 6.51x51 F288
6x52 6.52x52 F289
6x55 6.55x55 N292
TM7
7x34 7.35x34 F313