PDB
7SQO
Resolution
3.2 Å
Released
May 25, 2022
Receptor
OX2
Class
A
Species
Homo sapiens
Ligand
danavorexton
Function
Agonist
Reference
10.1038/S41467-022-30601-3

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Ligand Amino Acid Generic Number Segment Interaction Type
danavorexton A110 2.60x59 TM2 polar (hydrogen bond)
danavorexton T111 2.61x60 TM2 polar (hydrogen bond)
danavorexton V114 2.64x63 TM2 polar (hydrogen bond)
danavorexton W120 23.50x50 ECL1 Van der Waals
danavorexton P131 3.29x29 TM3 hydrophobic
danavorexton P131 3.29x29 TM3 Van der Waals
danavorexton Q134 3.32x32 TM3 polar (hydrogen bond)
danavorexton Q134 3.32x32 TM3 polar (hydrogen bond)
danavorexton Q134 3.32x32 TM3 polar (hydrogen bond)
danavorexton T135 3.33x33 TM3 Van der Waals
danavorexton V138 3.36x36 TM3 hydrophobic
danavorexton V138 3.36x36 TM3 Van der Waals
danavorexton Q187 4.60x61 TM4 Van der Waals
danavorexton F227 5.42x43 TM5 aromatic (edge-to-face)
danavorexton F227 5.42x43 TM5 Van der Waals
danavorexton T231 5.46x461 TM5 Van der Waals
danavorexton Y317 6.48x48 TM6 hydrophobic
danavorexton Y317 6.48x48 TM6 Van der Waals
danavorexton I320 6.51x51 TM6 hydrophobic
danavorexton I320 6.51x51 TM6 Van der Waals
danavorexton N324 6.55x55 TM6 polar (hydrogen bond)
danavorexton N324 6.55x55 TM6 polar (hydrogen bond)
danavorexton K327 6.58x58 TM6 Van der Waals
danavorexton H350 7.39x38 TM7 Van der Waals
danavorexton Y354 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 H H M R ICL1ECL1 T W F F ECL1ICL2 P L M F K S ICL2ECL2 E C S T V F P G L A N K T T L F T V C D E R W G G E ECL2ICL3 G T S S V V Q R K W K P L Q P V S Q P R G P G Q P T K S R M S A ICL3ECL3 G M F A H T E ECL3N-term M S G T K L E D S P P C R N W S S A S E L N E T Q E P F L N P T D Y D D E E F L R Y L W R E Y L H P K E N-termC-term G V H H R Q E D R L T R G R T S T E S R K S L T T Q I S N F D N I S K L S E Q V V L T S I S T L P A A N G A G P L Q N W C-term Y E W V L I A G Y I I V F V V A L I G N V L V C V A V W K N T V T N Y F I V N L S L A D V L V T I T C L P A T L V V D I T E G Q S L C K V I P Y L Q T V S V S V S V L T L S C I A L D R W Y A I C H T A K R A R N S I V I I W I V S C I I M I P Q A I V M I Y P K M Y H I C F F L V T Y M A P L C L M V L A Y L Q I F R K L W C R Q I P V A A E I K Q I R A R R K T A R M L M I V L L V F A I C Y L P I S I L N V L K R V F D R E T V Y A W F T F S H W L V Y A N S A A N P I I Y N F L S G K F K A C C L F R E E A F S C
Helix box plot — Download: PNG | SVG V N G I L A V V F V I I Y G A I L V W E 1 V N L S L A D V L V T T I C L P A T L V V 2 C S L T L V S V S V S V T Q L Y P I V K 3 A R N S I V I I W I V S C I I M I P Q 4 Y A L V M L C L P A M Y T V L F F C I H Y 5 M I V L L V F A I C Y L P I S I L N V L 6 I P N A A S N A Y V L W H S F T F W A 7

GPCRdb(A)
GPCRdb(A)
OX2 receptor
TM2
2x59 2.60x59 A110
2x60 2.61x60 T111
2x63 2.64x63 V114
ECL1
23x50 23.50x50 W120
TM3
3x29 3.29x29 P131
3x32 3.32x32 Q134
3x33 3.33x33 T135
3x36 3.36x36 V138
TM4
4x61 4.60x61 Q187
TM5
5x43 5.42x43 F227
5x461 5.46x461 T231
TM6
6x48 6.48x48 Y317
6x51 6.51x51 I320
6x55 6.55x55 N324
6x58 6.58x58 K327
TM7
7x38 7.39x38 H350
7x42 7.43x42 Y354