PDB
7UTZ
Resolution
2.4 Å
Released
Aug. 3, 2022
Receptor
TSH
Class
A
Species
Homo sapiens
Ligands
TR1402 (chain B)
TR1402 (chain A)
DPPC
Function
Agonist
Agonist
PAM
Reference
10.1038/S41586-022-05159-1
TR1402 (chain B) TR1402 (chain A) DPPC

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Ligand Amino Acid Generic Number Segment Interaction Type
TR1402 (chain B) K42 N-term Van der Waals
TR1402 (chain B) K58 N-term Van der Waals
TR1402 (chain B) I60 N-term Van der Waals
TR1402 (chain B) E61 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) R80 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) S84 N-term Van der Waals
TR1402 (chain A) I85 N-term polar (hydrogen bond)
TR1402 (chain B) I85 N-term Van der Waals
TR1402 (chain A) V87 N-term Van der Waals
TR1402 (chain A) H105 N-term polar (hydrogen bond)
TR1402 (chain A) R109 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) R109 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) R109 N-term polar (charge-charge)
TR1402 (chain A) N110 N-term polar (hydrogen bond)
TR1402 (chain B) N110 N-term polar (hydrogen bond)
TR1402 (chain A) R112 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) K129 N-term Van der Waals
TR1402 (chain A) F130 N-term hydrophobic
TR1402 (chain A) F130 N-term Van der Waals
TR1402 (chain A) F134 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) N135 N-term polar (hydrogen bond)
TR1402 (chain A) N135 N-term polar (hydrogen bond)
TR1402 (chain A) N135 N-term polar (hydrogen bond with backbone)
TR1402 (chain A) N135 N-term polar (hydrogen bond)
TR1402 (chain A) T136 N-term Van der Waals
TR1402 (chain A) T136 N-term polar (hydrogen bond with backbone)
TR1402 (chain A) G137 N-term Van der Waals
TR1402 (chain B) I152 N-term Van der Waals
TR1402 (chain A) I152 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) F153 N-term polar (hydrogen bond)
TR1402 (chain B) F153 N-term hydrophobic
TR1402 (chain B) F153 N-term Van der Waals
TR1402 (chain A) I155 N-term hydrophobic
TR1402 (chain A) I155 N-term Van der Waals
TR1402 (chain A) E157 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) D160 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) D160 N-term polar (hydrogen bond with backbone)
TR1402 (chain A) D160 N-term polar (charge-charge)
TR1402 (chain A) P162 N-term hydrophobic
TR1402 (chain A) P162 N-term Van der Waals
TR1402 (chain A) Y163 N-term Van der Waals
TR1402 (chain B) T179 N-term Van der Waals
TR1402 (chain A) K183 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) Y185 N-term polar (hydrogen bond)
TR1402 (chain A) Y185 N-term polar (hydrogen bond)
TR1402 (chain A) N186 N-term polar (hydrogen bond)
TR1402 (chain B) D203 N-term polar (charge-charge)
TR1402 (chain B) D203 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) A204 N-term Van der Waals
TR1402 (chain B) Y206 N-term polar (hydrogen bond)
TR1402 (chain B) K209 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) K209 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) L230 N-term Van der Waals
TR1402 (chain B) L230 N-term hydrophobic
TR1402 (chain B) E251 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) R274 N-term Van der Waals
TR1402 (chain B) G294 N-term Van der Waals
TR1402 (chain B) I295 N-term polar (hydrogen bond with backbone)
TR1402 (chain B) I295 N-term Van der Waals
TR1402 (chain B) L296 N-term polar (hydrogen bond with backbone)
TR1402 (chain B) L296 N-term Van der Waals
TR1402 (chain B) E297 N-term polar (hydrogen bond with backbone)
TR1402 (chain B) E297 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) M300 N-term hydrophobic
TR1402 (chain A) M300 N-term Van der Waals
TR1402 (chain B) T377 N-term polar (hydrogen bond)
TR1402 (chain A) L378 N-term Van der Waals
TR1402 (chain B) F381 N-term polar (hydrogen bond with backbone)
TR1402 (chain B) F381 N-term polar (hydrogen bond)
TR1402 (chain B) F381 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) D382 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) D382 N-term polar (hydrogen bond with backbone)
TR1402 (chain B) D382 N-term polar (charge-charge)
TR1402 (chain B) D382 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) Y385 N-term polar (hydrogen bond)
TR1402 (chain B) Y385 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain B) Y385 N-term polar (hydrogen bond)
TR1402 (chain A) D386 N-term polar (charge-assisted hydrogen bond)
TR1402 (chain A) D386 N-term polar (charge-charge)
TR1402 (chain B) T388 N-term polar (hydrogen bond with backbone)
TR1402 (chain B) T388 N-term polar (hydrogen bond)
TR1402 (chain B) I389 N-term polar (hydrogen bond with backbone)
TR1402 (chain A) I389 N-term Van der Waals
TR1402 (chain B) I389 N-term Van der Waals
DPPC F405 N-term hydrophobic
DPPC S505 3.36x36 TM3 polar (hydrogen bond)
DPPC E506 3.37x37 TM3 polar (charge-assisted hydrogen bond)
DPPC I568 ECL2 Van der Waals
DPPC L570 45.51x51 ECL2 Van der Waals
DPPC L570 45.51x51 ECL2 hydrophobic
DPPC P571 45.52x52 ECL2 polar (hydrogen bond with backbone)
DPPC P571 45.52x52 ECL2 Van der Waals
DPPC M572 ECL2 polar (hydrogen bond with backbone)
DPPC M572 ECL2 Van der Waals
DPPC T574 ECL2 polar (hydrogen bond)
DPPC I583 5.40x40 TM5 Van der Waals
DPPC V586 5.43x43 TM5 Van der Waals
DPPC L587 5.44x44 TM5 Van der Waals
DPPC N590 5.47x47 TM5 Van der Waals
DPPC I640 6.51x51 TM6 hydrophobic
DPPC I640 6.51x51 TM6 Van der Waals
DPPC Y643 6.54x54 TM6 Van der Waals
DPPC A644 6.55x55 TM6 polar (hydrogen bond with backbone)
DPPC A644 6.55x55 TM6 Van der Waals
DPPC A647 6.58x58 TM6 polar (hydrogen bond with backbone)
DPPC A647 6.58x58 TM6 Van der Waals
DPPC I648 6.59x59 TM6 polar (hydrogen bond with backbone)
DPPC I648 6.59x59 TM6 Van der Waals
DPPC P652 ECL3 polar (hydrogen bond)
DPPC I654 ECL3 polar (hydrogen bond with backbone)
DPPC I654 ECL3 Van der Waals
DPPC V656 7.31x30 TM7 Van der Waals
DPPC S659 7.34x33 TM7 polar (hydrogen bond with backbone)
DPPC S659 7.34x33 TM7 polar (hydrogen bond)
DPPC L662 7.37x36 TM7 hydrophobic
DPPC L662 7.37x36 TM7 Van der Waals
DPPC L663 7.38x37 TM7 polar (hydrogen bond with backbone)
DPPC L663 7.38x37 TM7 Van der Waals
DPPC Y667 7.42x41 TM7 polar (hydrogen bond)

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NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 H Y K L N ICL1ECL1 H S E Y Y N H A I D W Q T ECL1ICL2 A M R L D R K I ICL2ECL2 I S S Y A K V S I C L P M D T E ECL2ICL3 P Q Y N ICL3ECL3 K P L I T ECL3N-term M R P A D L L Q L V L L L D L P R D L G G M G C S S P P C E C H Q E E D F R V T C K D I Q R I P S L P P S T Q T L K L I E T H L R T I P S H A F S N L P N I S R I Y V S I D V T L Q Q L E S H S F Y N L S K V T H I E I R N T R N L T Y I D P D A L K E L P L L K F L G I F N T G L K M F P D L T K V Y S T D I F F I L E I T D N P Y M T S I P V N A F Q G L C N E T L T L K L Y N N G F T S V Q G Y A F N G T K L D A V Y L N K N K Y L T V I D K D A F G G V Y S G P S L L D V S Q T S V T A L P S K G L E H L K E L I A R N T W T L K K L P L S L S F L H L T R A D L S Y P S H C C A F K N Q K K I R G I L E S L M C N E S S M Q S L R Q R K S V N A L N S P L H Q E Y E E N L G D S I V G Y K E K S K F Q D T H N N A H Y Y V F F E E Q E D E I I G F G Q E L K N P Q E E T L Q A F D S H Y D Y T I C G D S E D M V C T P K S D E F N P C E D I M G N-termC-term G I C K R Q A Q A Y R G Q R V P P K N S T D I Q V Q K V T H D M R Q G L H N M E D V Y E L I E N S H L T P K K Q G Q I S E E Y M Q T V L C-term Y K F L R I V V W F V S L L A L L G N V F V L L I L L T S V P R F L M C N L A F A D F C M G M Y L L L I A S V D L Y T G P G C N T A G F F T V F A S E L S V Y T L T V I T L E R W Y A I T F R L R H A C A I M V G G W V C C F L L A L L P L V G T P L A L A Y I V F V L T L N I V A F V I V C C C Y V K I Y I T V R N P G D K D T K I A K R M A V L I F T D F I C M A P I S F Y A L S A I L N V S N S K I L L V L F Y P L N S C A N P F L Y A I F T K A V F I F F Q R D L L S K
Helix box plot — Download: PNG | SVG V N G L L A L L S V F W V V I R L F K Y 1 C N L A F A D F C M G M Y L L L I A S V 2 V T L T Y V S L E S A F V T F F G A T N 3 A C A I M V G G W V C C F L L A L L P L 4 Y C C C V I V F A V I N L T L V F V I Y 5 A V L I F T D F I C M A P I S F Y A L S 6 F P N A C S N L P Y F L V L L I K S N 7

GPCRdb(A)
GPCRdb(A)
TSH receptor
TM3
3x36 3.36x36 S505
3x37 3.37x37 E506
ECL2
45x51 45.51x51 L570
45x52 45.52x52 P571
TM5
5x40 5.40x40 I583
5x43 5.43x43 V586
5x44 5.44x44 L587
5x47 5.47x47 N590
TM6
6x51 6.51x51 I640
6x54 6.54x54 Y643
6x55 6.55x55 A644
6x58 6.58x58 A647
6x59 6.59x59 I648
TM7
7x30 7.31x30 V656
7x33 7.34x33 S659
7x36 7.37x36 L662
7x37 7.38x37 L663
7x41 7.42x41 Y667