PDB
7VV4
Resolution
3.0 Å
Released
Dec. 1, 2021
Receptor
MRGPRX2
Class
A
Species
Homo sapiens
Ligand
Function
linear cortistatin-14
Agonist
Reference
10.1038/S41586-021-04077-Y

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Ligand Amino Acid Generic Number Segment Interaction Type
linear cortistatin-14 N85 2.60x60 TM2 Van der Waals
linear cortistatin-14 T106 3.29x29 TM3 hydrophobic
linear cortistatin-14 M109 3.32x32 TM3 hydrophobic
linear cortistatin-14 E164 4.60x60 TM4 polar (charge-charge)
linear cortistatin-14 E164 4.60x60 TM4 polar (hydrogen bond)
linear cortistatin-14 C168 4.64x64 TM4 polar (hydrogen bond with backbone)
linear cortistatin-14 G169 ECL2 Van der Waals
linear cortistatin-14 F170 ECL2 hydrophobic
linear cortistatin-14 D176 5.32x32 TM5 Van der Waals
linear cortistatin-14 S177 5.33x33 TM5 Van der Waals
linear cortistatin-14 C180 5.36x36 TM5 Van der Waals
linear cortistatin-14 D184 5.40x40 TM5 polar (hydrogen bond)
linear cortistatin-14 D184 5.40x40 TM5 polar (charge-charge)
linear cortistatin-14 W243 6.55x55 TM6 hydrophobic
linear cortistatin-14 W243 6.55x55 TM6 aromatic (edge-to-face)
linear cortistatin-14 L247 6.59x59 TM6 hydrophobic
linear cortistatin-14 W248 6.60x60 TM6 Van der Waals
linear cortistatin-14 F257 7.31x30 TM7 Van der Waals
linear cortistatin-14 H261 7.35x34 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 R R ICL1ECL1 I S I N F ECL1ICL2 P I W Y R C R R ICL2ECL2 G F L F S D G ECL2ICL3 S R G L ICL3ECL3 K D S D V ECL3N-term M D P T T P A W G T E S T T V N G N D Q A L L L L C G K E N-termC-term R K Q W R L Q Q P I L K L A L Q R A L Q D I A E V D H S E G C F R Q G T P E M S R S S L V C-term T L I P V F L I L F I A L V G L V G N G F V L W L L G F R M N A F S V Y V L S L A G A D F L F L C F Q I I N C L V Y L S N F F C S P S F F T T V M T C A Y L A G L S M L S T V S T E R C L S V L W P R H L S A V V C V L L W A L S L L L S I L E G K F C D S G W C Q T F D F I T A A W L I F L F M V L C G S S L A L L V R I L C G P L T R L Y L T I L L T V L V F L L C G L P F G I Q W F L I L W I W L F C H I H P V S V V L S S L N S S A N P I I Y F F V G S F
Helix box plot — Download: PNG | SVG G N G V L G V L A I F L I L F V P I L T 1 L S L A G A D F L F L C F Q I I N C L V 2 T S L M S L G A L Y A C T M V T T F F S 3 S A V V C V L L W A L S L L L S I L E G 4 S S G C L V M F L F I L W A A T I F D F 5 L L T V L V F L L C G L P F G I Q W F L 6 I P N A S S N L S S L V V S V P H I H 7

GPCRdb(A)
GPCRdb(A)
MRGPRX2
TM2
2x60 2.60x60 N85
TM3
3x29 3.29x29 T106
3x32 3.32x32 M109
TM4
4x60 4.60x60 E164
4x64 4.64x64 C168
TM5
5x32 5.32x32 D176
5x33 5.33x33 S177
5x36 5.36x36 C180
5x40 5.40x40 D184
TM6
6x55 6.55x55 W243
6x59 6.59x59 L247
6x60 6.60x60 W248
TM7
7x30 7.31x30 F257
7x34 7.35x34 H261