PDB
Resolution
3.2 Å
Released
June 29, 2022
Receptor
Class
A
Species
Homo sapiens
Ligands
Function
fenoldopam (F:503)
Agonist
fenoldopam (F:502)
Agonist
fenoldopam (F:503) fenoldopam (F:502)

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Ligand Amino Acid Generic Number Segment Interaction Type
fenoldopam (F:502) K81 2.61x60 TM2 Van der Waals
fenoldopam (F:502) W99 3.28x28 TM3 hydrophobic
fenoldopam (F:502) V100 3.29x29 TM3 Van der Waals
fenoldopam (F:503) D103 3.32x32 TM3 polar (charge-charge)
fenoldopam (F:502) D103 3.32x32 TM3 polar (hydrogen bond)
fenoldopam (F:503) D103 3.32x32 TM3 polar (hydrogen bond)
fenoldopam (F:503) I104 3.33x33 TM3 hydrophobic
fenoldopam (F:503) S107 3.36x36 TM3 Van der Waals
fenoldopam (F:503) T108 3.37x37 TM3 Van der Waals
fenoldopam (F:503) S188 45.52x52 ECL2 Van der Waals
fenoldopam (F:502) S188 45.52x52 ECL2 Van der Waals
fenoldopam (F:502) S189 ECL2 polar (hydrogen bond)
fenoldopam (F:502) L190 ECL2 Van der Waals
fenoldopam (F:503) L190 ECL2 hydrophobic
fenoldopam (F:503) Y194 5.38x39 TM5 Van der Waals
fenoldopam (F:503) S198 5.42x43 TM5 polar (hydrogen bond)
fenoldopam (F:503) S198 5.42x43 TM5 polar (hydrogen bond)
fenoldopam (F:503) S202 5.46x461 TM5 Van der Waals
fenoldopam (F:503) W285 6.48x48 TM6 Van der Waals
fenoldopam (F:503) F288 6.51x51 TM6 hydrophobic
fenoldopam (F:503) F288 6.51x51 TM6 aromatic (edge-to-face)
fenoldopam (F:503) F289 6.52x52 TM6 hydrophobic
fenoldopam (F:503) F289 6.52x52 TM6 aromatic (edge-to-face)
fenoldopam (F:503) N292 6.55x55 TM6 Van der Waals
fenoldopam (F:502) S310 7.32x31 TM7 Van der Waals
fenoldopam (F:502) F313 7.35x34 TM7 hydrophobic
fenoldopam (F:503) F313 7.35x34 TM7 Van der Waals
fenoldopam (F:502) D314 7.36x35 TM7 polar (charge-charge)
fenoldopam (F:502) D314 7.36x35 TM7 polar (hydrogen bond)
fenoldopam (F:502) V317 7.39x38 TM7 Van der Waals
fenoldopam (F:503) W321 7.43x42 TM7 Van der Waals
fenoldopam (F:502) W321 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 R H L R S ICL1ECL1 F W P F ECL1ICL2 P F R Y E R K M ICL2ECL2 W H K A K P T S P S D G N A T S L A E T I D N C D S S L ECL2ICL3 T T T G N G K P V E C S Q P E S S F ICL3ECL3 G S G E T Q P F C I ECL3N-term M R T L N T S A M D G T G L V V E R D F N-termC-term C Y R L C P A T N N A I E T V S I N N N G A A M F S S H H E P R G S I S K E C N L V Y L I P H A V G S S E D L K K E E A A G I A R P L E K L S P A L S V I L D Y D T D V S L E K I Q P I T Q N G Q H P T C-term S V R I L T A C F L S L L I L S T L L G N T L V C A A V I R F K V T N F F V I S L A V S D L L V A V L V M P W K A V A E I A G G S F C N I W V A F D I M C S T A S I L N L C V I S V D R Y W A I S S T P K A A F I L I S V A W T L S V L I S F I P V Q L S S R T Y A I S S S V I S F Y I P V A I M I V T Y T R I Y R I A Q K Q I R R I A A L E R A A V H A K N C Q K M S F K R E T K V L K T L S V I M G V F V C C W L P F F I L N C I L P F C D S N T F D V F V W F G W A N S S L N P I I Y A F N A D F S T F R K A L L G
Helix box plot — Download: PNG | SVG T N G L L T S L I L L S L F C A T L I R 1 I S L A V S D L L V A L V V M P W K A V A 2 V C L N L I S A T S C M I D F A V W I N 3 A F I L I S V A W T L S V L I S F I P V 4 Y T V I M I A V P I Y F S I V S S S I A Y 5 S V I M G V F V C C W L P F F I L N C I 6 I P N L S S N A W G F W V F V D F T N 7

GPCRdb(A)
GPCRdb(A)
D1 receptor
TM2
2x60 2.61x60 K81
TM3
3x28 3.28x28 W99
3x29 3.29x29 V100
3x32 3.32x32 D103
3x33 3.33x33 I104
3x36 3.36x36 S107
3x37 3.37x37 T108
ECL2
45x52 45.52x52 S188
TM5
5x39 5.38x39 Y194
5x43 5.42x43 S198
5x461 5.46x461 S202
TM6
6x48 6.48x48 W285
6x51 6.51x51 F288
6x52 6.52x52 F289
6x55 6.55x55 N292
TM7
7x31 7.32x31 S310
7x34 7.35x34 F313
7x35 7.36x35 D314
7x38 7.39x38 V317
7x42 7.43x42 W321