PDB
7XJH
Resolution
3.3 Å
Released
May 4, 2022
Receptor
β3
Class
A
Species
Canis lupus familiaris
Ligand
LEVISOPRENALINE
Function
Agonist
Reference
10.1016/J.MOLCEL.2021.06.024

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Ligand Amino Acid Generic Number Segment Interaction Type
LEVISOPRENALINE W113 3.28x28 TM3 hydrophobic
LEVISOPRENALINE D117 3.32x32 TM3 polar (charge-assisted hydrogen bond)
LEVISOPRENALINE V118 3.33x33 TM3 Van der Waals
LEVISOPRENALINE V118 3.33x33 TM3 hydrophobic
LEVISOPRENALINE V121 3.36x36 TM3 hydrophobic
LEVISOPRENALINE V121 3.36x36 TM3 Van der Waals
LEVISOPRENALINE F198 45.52x52 ECL2 hydrophobic
LEVISOPRENALINE F198 45.52x52 ECL2 Van der Waals
LEVISOPRENALINE S208 5.42x43 TM5 polar (hydrogen bond with backbone)
LEVISOPRENALINE S208 5.42x43 TM5 polar (hydrogen bond)
LEVISOPRENALINE S208 5.42x43 TM5 Van der Waals
LEVISOPRENALINE S209 5.43x44 TM5 Van der Waals
LEVISOPRENALINE S212 5.46x461 TM5 polar (hydrogen bond)
LEVISOPRENALINE S212 5.46x461 TM5 Van der Waals
LEVISOPRENALINE F308 6.51x51 TM6 aromatic (edge-to-face)
LEVISOPRENALINE F308 6.51x51 TM6 Van der Waals
LEVISOPRENALINE F309 6.52x52 TM6 Van der Waals
LEVISOPRENALINE F309 6.52x52 TM6 hydrophobic
LEVISOPRENALINE N332 7.39x38 TM7 Van der Waals
LEVISOPRENALINE Y336 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 P R L Q ICL1ECL1 R W P L ECL1ICL2 P L R Y G A L V ICL2ECL2 W W R V G A D A E A Q R C H S N P H C C A F A S ECL2ICL3 G R F P P A E S P P A A S R S R S P G P A R R C A S P A A V P S D R L R P A ICL3ECL3 G P S L V ECL3N-term M A P W P H G N G S V A S W P A A P T P T P D A A N T S G N-termC-term R C R R E E H R A A A S P P G D P S A A P A A L T S P A E S S R C Q A L D G A S W G I S C-term L P G A P W A V A L A G A L L A L E V L A T V G G N L L V I V A I A R T T M T N V F V T S L A T A D L V V G L L V V P P G A T L A L T G G A T G C E L W T S V D V L C V T A S I E T L C A L A V D R Y L A V T N T K R R A R A A V V L V W V V S A A V S F A P I M S K N I P Y A L L S S S V S F Y L P L L V M L F V Y A R V F L V A T R Q L R L L R R E L R L L P L R E H R A L R T L G L I V G T F T L C W L P F F V A N V M R A L G P S P A L L A L N W L G Y A N S A F N P L I Y C R S P D F R R F R S A L L C
Helix box plot — Download: PNG | SVG L N G G V T A L V E L A L L A G A L A V 1 T S L A T A D L V V G L L V V P P G A T L 2 A C L T E I S A T V C L V D V S T W L E 3 A R A A V V L V W V V S A A V S F A P I 4 Y V F L M V L L P L Y F S V S S S L L A Y 5 G L I V G T F T L C W L P F F V A N V M 6 L P N F A S N A Y G L W N L A L L A P 7

GPCRdb(A)
GPCRdb(A)
β3-adrenoceptor
TM3
3x28 3.28x28 W113
3x32 3.32x32 D117
3x33 3.33x33 V118
3x36 3.36x36 V121
ECL2
45x52 45.52x52 F198
TM5
5x43 5.42x43 S208
5x44 5.43x44 S209
5x461 5.46x461 S212
TM6
6x51 6.51x51 F308
6x52 6.52x52 F309
TM7
7x38 7.39x38 N332
7x42 7.43x42 Y336