PDB
8HAO
Resolution
3.8 Å
Released
Dec. 21, 2022
Receptor
PTH1
Class
B1
Species
Homo sapiens
Ligand
Function
teriparatide
Agonist
Reference
10.1038/S41401-022-01032-Z

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Ligand Amino Acid Generic Number Segment Interaction Type
teriparatide M32 N-term Van der Waals
teriparatide T33 N-term Van der Waals
teriparatide K34 N-term polar (charge-charge)
teriparatide K34 N-term polar (hydrogen bond with backbone)
teriparatide Q37 N-term hydrophobic
teriparatide L41 N-term Van der Waals
teriparatide H114 N-term Van der Waals
teriparatide Y136 N-term Van der Waals
teriparatide D137 N-term polar (charge-charge)
teriparatide F138 N-term Van der Waals
teriparatide R162 N-term Van der Waals
teriparatide T163 N-term hydrophobic
teriparatide Y167 N-term Van der Waals
teriparatide V171 N-term Van der Waals
teriparatide F173 N-term hydrophobic
teriparatide L174 N-term hydrophobic
teriparatide E177 N-term polar (hydrogen bond)
teriparatide E177 N-term hydrophobic
teriparatide E180 1.32x32 TM1 polar (charge-charge)
teriparatide R181 1.33x33 TM1 Van der Waals
teriparatide F184 1.36x36 TM1 hydrophobic
teriparatide L187 1.39x39 TM1 Van der Waals
teriparatide I237 2.64x64 TM2 Van der Waals
teriparatide K240 2.67x67 TM2 polar (charge-charge)
teriparatide L244 2.71x71 TM2 hydrophobic
teriparatide V285 3.33x33 TM3 hydrophobic
teriparatide F288 3.36x36 TM3 hydrophobic
teriparatide L289 3.37x37 TM3 hydrophobic
teriparatide L292 3.40x40 TM3 hydrophobic
teriparatide D353 45.52x52 ECL2 Van der Waals
teriparatide L354 ECL2 Van der Waals
teriparatide S355 ECL2 Van der Waals
teriparatide K360 5.36x37 TM5 Van der Waals
teriparatide W361 5.37x38 TM5 Van der Waals
teriparatide I363 5.39x39 TM5 hydrophobic
teriparatide Q364 5.40x40 TM5 polar (hydrogen bond)
teriparatide Q364 5.40x40 TM5 hydrophobic
teriparatide I367 5.43x43 TM5 hydrophobic
teriparatide L368 5.44x44 TM5 Van der Waals
teriparatide F424 6.56x56 TM6 Van der Waals
teriparatide M425 6.57x57 TM6 polar (hydrogen bond with backbone)
teriparatide A426 ECL3 Van der Waals
teriparatide T427 ECL3 polar (hydrogen bond with backbone)
teriparatide P428 ECL3 Van der Waals
teriparatide Y429 ECL3 polar (hydrogen bond)
teriparatide Y429 ECL3 hydrophobic
teriparatide V432 ECL3 Van der Waals
teriparatide W437 7.35x34 TM7 hydrophobic
teriparatide W437 7.35x34 TM7 polar (hydrogen bond)
teriparatide Q440 7.38x37 TM7 polar (hydrogen bond)
teriparatide M441 7.39x38 TM7 hydrophobic
teriparatide E444 7.42x41 TM7 Van der Waals
teriparatide M445 7.43x42 TM7 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 R R L H ICL1ECL1 L D E A E R L T E E E L R A I A Q A P P P P A T A A A ECL1ICL2 A F F ICL2ECL2 N T G C W D L S S ECL2ICL3 R E T N A G R C ICL3ECL3 P Y T E V S ECL3N-term M G T A R I A P G L A L L L C C P V L S S A Y A L V D A D D V M T K E E Q I F L L H R A Q A Q C E K R L K E V L Q R P A S I M E S D K G W T S A S T S G K P R K D K A S G K L Y P E S E E D K E A P T G S R Y R G R P C L P E W D H I L C W P L G A P G E V V A V P C P D Y I Y D F N H K G H A Y R R C D R N G S W E L V P G H N R T W A N Y S E C V K N-termC-term S G S S S Y S Y G P M V S H T S V T N V G P R V G L G L P L S P R L L P T A T T N G H P Q L P G H A K P G T P A L E T L E T T P P A M A A P K D D G F L N G S C S G L D E E A S G P E R P P A L L Q E E W E T V M C-term F L T N E T R E R E V F D R L G M I Y T V G Y S V S L A S L T V A V L I L A Y F C T R N Y I H M H L F L S F M L R A V S I F V K D A V L Y S G A T G Y A G C R V A V T F F L Y F L A T N Y Y W I L V E G L Y L H S L I F M S E K K Y L W G F T V F G W G L P A V F V A V W V S V R A T L A G N K K W I I Q V P I L A S I V L N F I L F I N I V R V L A T K L D T R Q Q Y R K L L K S T L V L M P L F G V H Y I V F M A T G T L W Q V Q M H Y E M L F N S F Q G F F V A I I Y C F C N G E I K K W T L K R K V Q A E S W S R A L D F A R
Helix box plot — Download: PNG | SVG T L S A L S V S Y G V T Y I M G L R D F 1 M H L F L S F M L R A V S I F V K D A V 2 V L I W Y Y N T A L F Y L F F T V A V R 3 Y L W G F T V G F W G L P A V F V A V W V 4 F L I F N L V I S A L I P V Q I I W K K N 5 L V L M P L F G V H Y I V F M A T 6 I A V F F G Q F S N F L M E Y H M Q V 7

GPCRdb(A)
GPCRdb(B)
PTH1 receptor
TM1
1x28 1.32x32 E180
1x29 1.33x33 R181
1x32 1.36x36 F184
1x35 1.39x39 L187
TM2
2x57 2.64x64 I237
2x60 2.67x67 K240
2x64 2.71x71 L244
TM3
3x29 3.33x33 V285
3x32 3.36x36 F288
3x33 3.37x37 L289
3x36 3.40x40 L292
ECL2
45x52 45.52x52 D353
TM5
5x41 5.36x37 K360
5x42 5.37x38 W361
5x43 5.39x39 I363
5x44 5.40x40 Q364
5x47 5.43x43 I367
5x48 5.44x44 L368
TM6
6x51 6.56x56 F424
6x52 6.57x57 M425
TM7
7x30 7.35x34 W437
7x33 7.38x37 Q440
7x34 7.39x38 M441
7x37 7.42x41 E444
7x38 7.43x42 M445