PDB
8JJP
Resolution
2.9 Å
Released
Aug. 21, 2024
Receptor
chemerin 2
Class
A
Species
Homo sapiens
Ligand
Function
chemerin C-terminal peptide
Agonist
Reference
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Ligand Amino Acid Generic Number Segment Interaction Type
chemerin C-terminal peptide Y93 2.60x60 TM2 polar (hydrogen bond)
chemerin C-terminal peptide Y96 2.63x63 TM2 polar (hydrogen bond)
chemerin C-terminal peptide F101 ECL1 hydrophobic
chemerin C-terminal peptide F101 ECL1 aromatic (edge-to-face)
chemerin C-terminal peptide S114 3.29x29 TM3 polar (hydrogen bond)
chemerin C-terminal peptide A117 3.32x32 TM3 hydrophobic
chemerin C-terminal peptide Q118 3.33x33 TM3 polar (hydrogen bond)
chemerin C-terminal peptide M121 3.36x36 TM3 hydrophobic
chemerin C-terminal peptide R176 ECL2 polar (charge-charge)
chemerin C-terminal peptide F181 ECL2 Van der Waals
chemerin C-terminal peptide L186 ECL2 hydrophobic
chemerin C-terminal peptide C187 45.50x50 ECL2 Van der Waals
chemerin C-terminal peptide Y188 45.51x51 ECL2 hydrophobic
chemerin C-terminal peptide N189 45.52x52 ECL2 polar (hydrogen bond with backbone)
chemerin C-terminal peptide F191 ECL2 Van der Waals
chemerin C-terminal peptide H203 5.35x36 TM5 Van der Waals
chemerin C-terminal peptide Y262 6.51x51 TM6 hydrophobic
chemerin C-terminal peptide E269 6.58x58 TM6 polar (hydrogen bond)
chemerin C-terminal peptide E269 6.58x58 TM6 hydrophobic
chemerin C-terminal peptide I272 ECL3 hydrophobic
chemerin C-terminal peptide H273 ECL3 Van der Waals
chemerin C-terminal peptide H279 ECL3 aromatic (pi-cation)
chemerin C-terminal peptide Q283 7.32x31 TM7 hydrophobic
chemerin C-terminal peptide I286 7.35x34 TM7 Van der Waals
chemerin C-terminal peptide P287 7.36x35 TM7 Van der Waals
chemerin C-terminal peptide T290 7.39x38 TM7 hydrophobic
chemerin C-terminal peptide F294 7.43x42 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 K K ICL1ECL1 F H W P F ECL1ICL2 P V L S H R H R ICL2ECL2 D T V E F N N H T L C Y N N F Q K H D P D ECL2ICL3 I L I ICL3ECL3 H N S Y S ECL3N-term M E D L E E T L F E E F E N Y S Y D L D Y Y S L E S D L E E K V Q L N-termC-term A E I L K Y T L W E V S C S G T V S E Q L R N S E T K N L C L L E T A Q C-term G V V H W V S L V L Y C L A F V L G I P G N A I V I W F T G F K W T V T T L W F L N L A I A D F I F L L F L P L Y I S Y V A M N G I W L C K A N S F T A Q L N M F A S V F F L T V I S L D H Y I H L I H T L K N S L I V I I F I W L L A S L I G G P A L Y F R L T L I R H H V L T W V K F I I G Y L F P L L T M S I C Y L C L I F K V K K R S S S R H F W T I L V V V V A F V V C W T P Y H L F S I W E L T I H H H V M Q A G I P L S T G L A F L N S C L N P I L Y V L I S K K F R S F Q A R S V
Helix box plot — Download: PNG | SVG A N G P I G L V F A L C Y L V L S V W H 1 L N L A I A D F I F L L F L P L Y I S Y 2 V T L F F V S A F M N L Q A T F S N A K 3 S L I V I I F I W L L A S L I G G P A L 4 Y C I S M T L L P F L Y G I I F K V W T L 5 L V V V V A F V V C W T P Y H L F S I W 6 I P N L C S N L F A L G T S L P I G A 7

GPCRdb(A)
GPCRdb(A)
chemerin receptor 2
TM2
2x60 2.60x60 Y93
2x63 2.63x63 Y96
TM3
3x29 3.29x29 S114
3x32 3.32x32 A117
3x33 3.33x33 Q118
3x36 3.36x36 M121
ECL2
45x50 45.50x50 C187
45x51 45.51x51 Y188
45x52 45.52x52 N189
TM5
5x36 5.35x36 H203
TM6
6x51 6.51x51 Y262
6x58 6.58x58 E269
TM7
7x31 7.32x31 Q283
7x34 7.35x34 I286
7x35 7.36x35 P287
7x38 7.39x38 T290
7x42 7.43x42 F294