PDB
8X8N
Resolution
2.9 Å
Released
June 12, 2024
Receptor
SST5
Class
A
Species
Homo sapiens
Ligand
Function
octreotide
Agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
octreotide L96 2.60x60 TM2 Van der Waals
octreotide N100 2.64x64 TM2 Van der Waals
octreotide D119 3.32x32 TM3 polar (charge-charge)
octreotide Q123 3.36x36 TM3 Van der Waals
octreotide N187 45.51x51 ECL2 Van der Waals
octreotide W190 ECL2 hydrophobic
octreotide W190 ECL2 aromatic (edge-to-face)
octreotide F201 5.38x39 TM5 hydrophobic
octreotide I202 5.39x40 TM5 hydrophobic
octreotide F264 6.51x51 TM6 hydrophobic
octreotide P277 ECL3 Van der Waals
octreotide S282 7.31x30 TM7 Van der Waals
octreotide Y286 7.35x34 TM7 hydrophobic
octreotide V290 7.39x38 TM7 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 A K M K ICL1ECL1 S F W P F ECL1ICL2 P L S S A R W R ICL2ECL2 D V Q E G G T C N A S W P E ECL2ICL3 G C V R ICL3ECL3 A L P Q E P A ECL3N-term M E P L F P A S T P S W N A S S P G A A S G G G D N R T L V G P A P S A N-termC-term L R K G S G A K D A D A T E P R P D R I R Q Q Q E A T P P A H R A A A N G L M Q T S K L C-term G A R A V L V P V L Y L L V C A A G L G G N T L V I Y V V L R F T V T N I Y I L N L A V A D V L Y M L G L P F L A T Q N A A G P V L C R L V M T L D G V N Q F T S V F C L T V M S V D R Y L A V V H R P R V A K L A S A A A W V L S L C M S L P L L V F A P V G L W G A V F I I Y T A V L G F F A P L L V I C L C Y L L I V V K V R A A G V R V R R S E R K V T R M V L V V V L V F A G C W L P F F T V N I V N L A V S A G L Y F F V V I L S Y A N S C A N P V L Y G F L S D N F Q K F R Q S V L C
Helix box plot — Download: PNG | SVG T N G G L G A A C V L L Y L V P V L V A 1 L N L A V A D V L Y M L G L P F L A T Q 2 V T L C F V S T F Q N V G D L T M V L R 3 A K L A S A A A W V L S L C M S L P L 4 Y C L C I V L L P A F F G L V A T Y I I F 5 L V V V L V F A G C W L P F F T V N I V 6 V P N A C S N A Y S L I V V F F Y L G 7

GPCRdb(A)
GPCRdb(A)
SST5 receptor
TM2
2x60 2.60x60 L96
2x64 2.64x64 N100
TM3
3x32 3.32x32 D119
3x36 3.36x36 Q123
ECL2
45x51 45.51x51 N187
TM5
5x39 5.38x39 F201
5x40 5.39x40 I202
TM6
6x51 6.51x51 F264
TM7
7x30 7.31x30 S282
7x34 7.35x34 Y286
7x38 7.39x38 V290