Structure information

SST1 receptor

PROTEIN CLASS

Class A (Rhodopsin)

PDB CODE

8XIP

SPECIES

Homo sapiens

RESOLUTION

3.290

PREFERRED CHAIN

A

REFERENCE

PUBLICATION DATE

July 3, 2024

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Ligand Interaction Browser

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Ligand Amino Acid Generic Number Segment Interaction Type
Ligand Amino Acid Generic Number Segment Interaction Type
004-DTR-LYS-TY5-PHE-A1D5E F113 2.59x59 TM2 hydrophobic
004-DTR-LYS-TY5-PHE-A1D5E L114 2.60x60 TM2 hydrophobic
004-DTR-LYS-TY5-PHE-A1D5E S117 2.63x63 TM2 polar (hydrogen bond)
004-DTR-LYS-TY5-PHE-A1D5E S117 2.63x63 TM2 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E V133 3.28x28 TM3 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E L134 3.29x29 TM3 hydrophobic
004-DTR-LYS-TY5-PHE-A1D5E L134 3.29x29 TM3 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E D137 3.32x32 TM3 polar (charge-assisted hydrogen bond)
004-DTR-LYS-TY5-PHE-A1D5E M141 3.36x36 TM3 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E C208 45.50x50 ECL2 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E N209 45.51x51 ECL2 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E M210 45.52x52 ECL2 hydrophobic
004-DTR-LYS-TY5-PHE-A1D5E M210 45.52x52 ECL2 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E L220 5.35x36 TM5 hydrophobic
004-DTR-LYS-TY5-PHE-A1D5E L220 5.35x36 TM5 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E Q291 6.55x55 TM6 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E Q291 6.55x55 TM6 polar (hydrogen bond)
004-DTR-LYS-TY5-PHE-A1D5E D300 ECL3 polar (charge-assisted hydrogen bond)
004-DTR-LYS-TY5-PHE-A1D5E A302 ECL3 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E S305 7.35x34 TM7 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E Q306 7.36x35 TM7 Van der Waals
004-DTR-LYS-TY5-PHE-A1D5E Y313 7.43x42 TM7 Van der Waals

Ligands

004-DTR-LYS-TY5-PHE-A1D5E

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Residue Diagrams

S N G C L G V L C V V S Y I F S I L I A 1 L N L A I A D E L L M L S V P F L V T S 2 V T L C Y I S T F M N V A D V S L V L R 3 A K V V N L G V W V L S L L V I L P I 4 Y C L C I A G V P L L F G M L F T Y L V F 5 M M V V M V F V I C W M P F Y V V Q L V 6 I P N A C S N A Y G L I V S L Q S V T 7
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ICL1 A K M K ICL1ECL1 R H W P F ECL1ICL2 P I K A A R Y R ICL2ECL2 R T A A N S D G T V A C N M L M P E ECL2ICL3 W Q Q R K R S ICL3ECL3 E Q D ECL3N-term M F P N G T A S S P S S S P S P S P G S C G E G G G S R G P G A G A A D G M E E P G R N A S Q N G T L S N-termC-term L S W M D N A A E E P V D Y Y A T A L K S R A Y S V E D F Q P E N L E S G G V F R N G T C T S R I T T L C-term E G Q G S A I L I S F I Y S V V C L V G L C G N S M V I Y V I L R Y T A T N I Y I L N L A I A D E L L M L S V P F L V T S T L L G A L L C R L V L S V D A V N M F T S I Y C L T V L S V D R Y V A V V H R P T V A K V V N L G V W V L S L L V I L P I V V F S P A Q R W L V G F V L Y T F L M G F L L P V G A I C L C Y V L I I A K M R M V A L K A G E R K I T L M V M M V V M V F V I C W M P F Y V V Q L V N V F A D A T V S Q L S V I L G Y A N S C A N P I L Y G F L S D N F Q R F K R S I L C
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Residue Table


GPCRdb(A)
GPCRdb(A)
SST1 receptor
TM2
2x59 2.59x59 F113
2x60 2.60x60 L114
2x63 2.63x63 S117
TM3
3x28 3.28x28 V133
3x29 3.29x29 L134
3x32 3.32x32 D137
3x36 3.36x36 M141
ECL2
45x50 45.50x50 C208
45x51 45.51x51 N209
45x52 45.52x52 M210
TM5
5x36 5.35x36 L220
TM6
6x55 6.55x55 Q291
TM7
7x34 7.35x34 S305
7x35 7.36x35 Q306
7x42 7.43x42 Y313