PDB
8YH0
Resolution
2.9 Å
Released
Nov. 6, 2024
Receptor
A3
Class
A
Species
Ovis aries
Ligand
Function
NECA
Agonist
Reference
10.1038/S41467-024-53473-1

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Ligand Amino Acid Generic Number Segment Interaction Type
NECA M90 3.32x32 TM3 Van der Waals
NECA L91 3.33x33 TM3 Van der Waals
NECA T94 3.36x36 TM3 polar (hydrogen bond)
NECA H95 3.37x37 TM3 Van der Waals
NECA I98 3.40x40 TM3 hydrophobic
NECA F167 45.52x52 ECL2 aromatic (face-to-face)
NECA M176 ECL2 Van der Waals
NECA S180 5.42x43 TM5 Van der Waals
NECA I185 5.47x47 TM5 hydrophobic
NECA W242 6.48x48 TM6 hydrophobic
NECA L245 6.51x51 TM6 Van der Waals
NECA N249 6.55x55 TM6 polar (hydrogen bond)
NECA N249 6.55x55 TM6 polar (hydrogen bond)
NECA L263 7.35x34 TM7 Van der Waals
NECA I267 7.39x38 TM7 Van der Waals
NECA H271 7.43x42 TM7 polar (hydrogen bond)

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Snake plot — Download: PNG | SVG
ICL1 P S L Q ICL1ECL1 V T I ECL1ICL2 T V R Y R R V T ICL2ECL2 W N M K L S S A D E N L T F L P C R F R S V M R M D Y M V Y F ECL2ECL3 D G Q V ECL3N-term M P V N S T A V N-termC-term Q P S K S M D P S T E Q T S E C-term S W T S V T Y I T V E I L I G L C A I V G N V L V I W V V K L N T T T F Y F I V S L A L A D I A V G V L V M P L A I V I S L G H F Y S C L F M T C L M L I F T H A S I M S L L A I A V D R Y L R V K L T Q R R I W L A L G L C W L V S F L V G L T P M F G S F F L W I L V P L V V M C A I Y F D I F Y I I R N R L S Q S F S G S R E T G A F Y G R E F K T A K S L L L V L F L F A L C W L P L S I I N C I L Y F P Q T V L Y L G I L L S H A N S M M N P I V Y A Y K I K K F L L I V M C K E T Y L K A C
Helix box plot — Download: PNG | SVG V N G V I A C L G I L I E V T I Y T V S 1 V S L A L A D I A V G L V V M P L A I V I 2 A L L S M I S A H T F I L M L C T M F L 3 I W L A L G L C W L V S F L V G L T P M 4 Y I A C M V V L P V L I W L F F S 5 L L V L F L F A L C W L P L S I I N C I 6 I P N M M S N A H S L L I G L Y L V T 7

GPCRdb(A)
GPCRdb(A)
A3 receptor
TM3
3x32 3.32x32 M90
3x33 3.33x33 L91
3x36 3.36x36 T94
3x37 3.37x37 H95
3x40 3.40x40 I98
ECL2
45x52 45.52x52 F167
TM5
5x43 5.42x43 S180
5x47 5.47x47 I185
TM6
6x48 6.48x48 W242
6x51 6.51x51 L245
6x55 6.55x55 N249
TM7
7x34 7.35x34 L263
7x38 7.39x38 I267
7x42 7.43x42 H271