PDB
8YH3
Resolution
3.4 Å
Released
Nov. 6, 2024
Receptor
A3
Class
A
Species
Ovis aries
Ligand
Function
CHEMBL383144
Agonist
Reference
10.1038/S41467-024-53473-1

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Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL383144 V65 2.57x56 TM2 Van der Waals
CHEMBL383144 M90 3.32x32 TM3 Van der Waals
CHEMBL383144 T94 3.36x36 TM3 Van der Waals
CHEMBL383144 F167 45.52x52 ECL2 aromatic (face-to-face)
CHEMBL383144 R168 ECL2 Van der Waals
CHEMBL383144 M173 ECL2 Van der Waals
CHEMBL383144 M176 ECL2 Van der Waals
CHEMBL383144 L245 6.51x51 TM6 Van der Waals
CHEMBL383144 N249 6.55x55 TM6 polar (hydrogen bond)
CHEMBL383144 N249 6.55x55 TM6 polar (hydrogen bond)
CHEMBL383144 L252 6.58x58 TM6 Van der Waals
CHEMBL383144 L263 7.35x34 TM7 Van der Waals
CHEMBL383144 I267 7.39x38 TM7 Van der Waals
CHEMBL383144 H271 7.43x42 TM7 polar (hydrogen bond)

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Snake plot — Download: PNG | SVG
ICL1 P S L Q ICL1ECL1 V T I ECL1ICL2 T V R Y R R V T ICL2ECL2 W N M K L S S A D E N L T F L P C R F R S V M R M D Y M V Y F ECL2ECL3 D G Q V ECL3N-term M P V N S T A V N-termC-term Q P S K S M D P S T E Q T S E C-term S W T S V T Y I T V E I L I G L C A I V G N V L V I W V V K L N T T T F Y F I V S L A L A D I A V G V L V M P L A I V I S L G H F Y S C L F M T C L M L I F T H A S I M S L L A I A V D R Y L R V K L T Q R R I W L A L G L C W L V S F L V G L T P M F G S F F L W I L V P L V V M C A I Y F D I F Y I I R N R L S Q S F S G S R E T G A F Y G R E F K T A K S L L L V L F L F A L C W L P L S I I N C I L Y F P Q T V L Y L G I L L S H A N S M M N P I V Y A Y K I K K F L L I V M C K E T Y L K A C
Helix box plot — Download: PNG | SVG V N G V I A C L G I L I E V T I Y T V S 1 V S L A L A D I A V G L V V M P L A I V I 2 A L L S M I S A H T F I L M L C T M F L 3 I W L A L G L C W L V S F L V G L T P M 4 Y I A C M V V L P V L I W L F F S 5 L L V L F L F A L C W L P L S I I N C I 6 I P N M M S N A H S L L I G L Y L V T 7

GPCRdb(A)
GPCRdb(A)
A3 receptor
TM2
2x56 2.57x56 V65
TM3
3x32 3.32x32 M90
3x36 3.36x36 T94
ECL2
45x52 45.52x52 F167
TM6
6x51 6.51x51 L245
6x55 6.55x55 N249
6x58 6.58x58 L252
TM7
7x34 7.35x34 L263
7x38 7.39x38 I267
7x42 7.43x42 H271