PDB
8YN6
Resolution
2.8 Å
Released
Oct. 9, 2024
Receptor
H3
Class
A
Species
Homo sapiens
Ligand
imetit
Function
Agonist
Reference
10.1038/S41467-024-52585-Y

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Ligand Amino Acid Generic Number Segment Interaction Type
imetit D114 3.32x32 TM3 polar (charge-assisted hydrogen bond)
imetit Y115 3.33x33 TM3 Van der Waals
imetit C118 3.36x36 TM3 Van der Waals
imetit E206 5.46x461 TM5 polar (charge-assisted hydrogen bond)
imetit Y374 6.51x51 TM6 aromatic (face-to-edge)
imetit Y374 6.51x51 TM6 Van der Waals
imetit F398 7.39x38 TM7 polar (hydrogen bond with backbone)
imetit F398 7.39x38 TM7 aromatic (face-to-face)
imetit F398 7.39x38 TM7 Van der Waals
imetit L401 7.42x41 TM7 hydrophobic
imetit L401 7.42x41 TM7 Van der Waals
imetit W402 7.43x42 TM7 aromatic (face-to-edge)
imetit W402 7.43x42 TM7 polar (hydrogen bond)

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ICL1 S S L R ICL1ECL1 G R W T F ECL1ICL2 A V S Y R A Q Q G ICL2ECL2 W E Y L S G G S S I P E G H C Y A E F F Y ECL2ICL3 A R E A A G P E P P P E A Q P S P P P P P G C W G C W Q K G H G E A M P L H R Y G V G E A A V G A E A G E A T L G G G G G G G S V A S P T S S S G S S S R G T E R P R S L K R G S K P S A S S A S L E K R M K M V S Q S F T Q ICL3ECL3 H G H C V ECL3N-term M E R A P P D G P L N A S G A L A G E A A A A G G A R G F S A A W T A N-termC-term P Q K L K I Q P H S S L E H C W K C-term V L A A L M A L L I V A T V L G N A L V M L A F V A D T Q N N F F L L N L A I S D F L V G A F C I P L Y V P Y V L T G R G L C K L W L V V D Y L L C T S S A F N I V L I S Y D R F L S V T R D T R R A V R K M L L V W V L A F L L Y G P A I L S N W Y F L I T A S T L E F F T P F L S V T F F N L S I Y L N I Q R R T R L R L D G R F R L S R D R K V A K S L A V I V S I F G L C W A P Y T L L M I I R A A C P D Y W Y E T S F W L L W A N S A V N P V L Y P L C H H S F T K F R R A L L C
Helix box plot — Download: PNG | SVG A N G L V T A V I L L A M L A A L V 1 L N L A I S D F L V G F A C I P L Y V P Y 2 L V I N F A S S T C L L Y D V V L W L K 3 A V R K M L L V W V L A F L L Y G P A 4 N F F T V S L F P T F F E L T S A T I L F 5 A V I V S I F G L C W A P Y T L L M I I 6 V P N V A S N A W L L W F S T E Y W Y 7

GPCRdb(A)
GPCRdb(A)
H3 receptor
TM3
3x32 3.32x32 D114
3x33 3.33x33 Y115
3x36 3.36x36 C118
TM5
5x461 5.46x461 E206
TM6
6x51 6.51x51 Y374
TM7
7x38 7.39x38 F398
7x41 7.42x41 L401
7x42 7.43x42 W402