PDB
8ZMF
Resolution
3.6 Å
Released
Aug. 28, 2024
Receptor
5-HT2C
Class
A
Species
Homo sapiens
Ligand
CHEMBL5575992
Function
Inverse agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
CHEMBL5575992 W130 3.28x28 TM3 hydrophobic
CHEMBL5575992 D134 3.32x32 TM3 polar (charge-assisted hydrogen bond)
CHEMBL5575992 V135 3.33x33 TM3 hydrophobic
CHEMBL5575992 V135 3.33x33 TM3 Van der Waals
CHEMBL5575992 S138 3.36x36 TM3 Van der Waals
CHEMBL5575992 T139 3.37x37 TM3 Van der Waals
CHEMBL5575992 I142 3.40x40 TM3 Van der Waals
CHEMBL5575992 V185 4.56x56 TM4 Van der Waals
CHEMBL5575992 V185 4.56x56 TM4 hydrophobic
CHEMBL5575992 I189 4.60x61 TM4 hydrophobic
CHEMBL5575992 I189 4.60x61 TM4 Van der Waals
CHEMBL5575992 L209 45.52x52 ECL2 hydrophobic
CHEMBL5575992 L209 45.52x52 ECL2 Van der Waals
CHEMBL5575992 F214 5.38x39 TM5 hydrophobic
CHEMBL5575992 F214 5.38x39 TM5 Van der Waals
CHEMBL5575992 V215 5.39x40 TM5 Van der Waals
CHEMBL5575992 G218 5.42x43 TM5 Van der Waals
CHEMBL5575992 S219 5.43x44 TM5 Van der Waals
CHEMBL5575992 A222 5.46x461 TM5 Van der Waals
CHEMBL5575992 F223 5.47x47 TM5 hydrophobic
CHEMBL5575992 F223 5.47x47 TM5 Van der Waals
CHEMBL5575992 F320 6.44x44 TM6 Van der Waals
CHEMBL5575992 W324 6.48x48 TM6 aromatic (face-to-edge)
CHEMBL5575992 W324 6.48x48 TM6 Van der Waals
CHEMBL5575992 F327 6.51x51 TM6 Van der Waals
CHEMBL5575992 F327 6.51x51 TM6 hydrophobic
CHEMBL5575992 F328 6.52x52 TM6 aromatic (edge-to-face)
CHEMBL5575992 F328 6.52x52 TM6 Van der Waals
CHEMBL5575992 V354 7.39x38 TM7 Van der Waals
CHEMBL5575992 Y358 7.43x42 TM7 Van der Waals
CHEMBL5575992 Y358 7.43x42 TM7 hydrophobic

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ICL1 K K L H ICL1ECL1 Y V W P L ECL1ICL2 P I E H S R F N ICL2ECL2 E E K V F V N N T T C V L N ECL2ICL3 G H T E E P P G L S L D F L K C C K R N T A E E E N S A N P N Q D Q N A R R R K K K E R R P R G T ICL3ECL3 E K S C ECL3N-term M V N L R N A V H S F L V H L I G L L V W Q S D I S V S P V A A I V T D I F N T S D G G R F K F P D G V Q N-termC-term N Y K V E K K P P V R Q I P R V A A T A L S G R E L N V N I Y R H T N E P V I E K A S D N E P G I E M Q V E N L E L P V N P S S V V S E R I S S V C-term N W P A L S I V I I I I M T I G G N I L V I M A V S M E N A T N Y F L M S L A I A D M L V G L L V M P L S L L A I L Y D P R Y L C P V W I S L D V L F S T A S I M H L C A I S L D R Y V A I R N S R T K A I M K I A I V W A I S I G V S V P I P V I G L R D D P N F V L I G S F V A F F I P L T I M V I T Y C L T I Y V L R R Q A L M L L H M Q A I N N E R K A S K V L G I V F F V F L I M W C P F F I T N I L S V L C N Q K L M E K L L N V F V W I G Y V C S G I N P L V Y T L F N K I F S N Y R R A Y L R C
Helix box plot — Download: PNG | SVG I N G G I T M I I I I V I S L A P W N 1 M S L A I A D M L V G L L V M P L S L L A 2 A C L H M I S A T S F L V D L S I W V P 3 A I M K I A I V W A I S I G V S V P I 4 Y T I V M I T L P I F F A V F S G I L V F 5 G I V F F V F L I M W C P F F I T N I L 6 L P N I G S C V Y G I W V F V N L L K 7

GPCRdb(A)
GPCRdb(A)
5-HT2C receptor
TM3
3x28 3.28x28 W130
3x32 3.32x32 D134
3x33 3.33x33 V135
3x36 3.36x36 S138
3x37 3.37x37 T139
3x40 3.40x40 I142
TM4
4x56 4.56x56 V185
4x61 4.60x61 I189
ECL2
45x52 45.52x52 L209
TM5
5x39 5.38x39 F214
5x40 5.39x40 V215
5x43 5.42x43 G218
5x44 5.43x44 S219
5x461 5.46x461 A222
5x47 5.47x47 F223
TM6
6x44 6.44x44 F320
6x48 6.48x48 W324
6x51 6.51x51 F327
6x52 6.52x52 F328
TM7
7x38 7.39x38 V354
7x42 7.43x42 Y358