PDB
Resolution
2.9 Å
Released
Dec. 11, 2024
Receptor
Class
A
Species
Homo sapiens
Ligand
EP-2825
Function
Agonist
Reference
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Ligand Amino Acid Generic Number Segment Interaction Type
EP-2825 R103 3.30x30 TM3 polar (charge-assisted hydrogen bond)
EP-2825 Y106 3.33x33 TM3 hydrophobic
EP-2825 Y106 3.33x33 TM3 Van der Waals
EP-2825 T160 4.60x60 TM4 Van der Waals
EP-2825 C164 4.64x64 TM4 Van der Waals
EP-2825 F170 ECL2 hydrophobic
EP-2825 C175 5.33x34 TM5 Van der Waals
EP-2825 D179 5.37x38 TM5 polar (charge-assisted hydrogen bond)
EP-2825 Q182 5.40x41 TM5 Van der Waals
EP-2825 A183 5.41x42 TM5 Van der Waals
EP-2825 A183 5.41x42 TM5 hydrophobic
EP-2825 S238 6.52x52 TM6 Van der Waals
EP-2825 W241 6.55x55 TM6 aromatic (face-to-face)
EP-2825 W241 6.55x55 TM6 Van der Waals
EP-2825 F242 6.56x56 TM6 hydrophobic
EP-2825 F242 6.56x56 TM6 Van der Waals
EP-2825 Y245 6.59x59 TM6 Van der Waals

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Snake plot — Download: PNG | SVG
ICL1 H R ICL1ECL1 P L V N T ECL1ICL2 P I W F K C H R ICL2ECL2 S K F L K F N E D ECL2ICL3 Q Q W R R ICL3ECL3 S L P P E M ECL3N-term M N Q T L N S S G T V E S A L N Y S R G S T V H T N-termC-term L Q Q A L R E E P E L E G G E T P T V G T N E M G A C-term A Y L V L S S L A M F T C L C G M A G N S M V I W L L G F R M N P F C I Y I L N L A A A D L L F L F S M A S T L S L E T Q T D K V H E L M K R L M Y F A Y T V G L S L L T A I S T Q R C L S V L F P R H L S A W V C G L L W T L C L L M N G L T S S F C R C F R V D M V Q A A L I M G V L T P V M T L S S L T L F V W V R R S S Q P T R L F V V V L A S V L V F L I C S L P L S I Y W F V L Y W L Q V L C F S L S R L S S S V S S S A N P V I Y F L V G S R L P T T V R S H R R S L G
Helix box plot — Download: PNG | SVG S N G A M G C L C T F M A L S S L V L Y 1 L N L A A A D L L F L F S M A S T L S L 2 A T L L S L G V T Y A F Y M L R K M L E 3 S A W V C G L L W T L C L L M N G L T S 4 T L S S L T M V P T L V G M I L A A Q V M 5 L A S V L V F L I C S L P L S I Y W F V 6 V P N A S S S V S S S L R S L S F C L 7

GPCRdb(A)
GPCRdb(A)
MRGPRD
TM3
3x30 3.30x30 R103
3x33 3.33x33 Y106
TM4
4x60 4.60x60 T160
4x64 4.64x64 C164
TM5
5x34 5.33x34 C175
5x38 5.37x38 D179
5x41 5.40x41 Q182
5x42 5.41x42 A183
TM6
6x52 6.52x52 S238
6x55 6.55x55 W241
6x56 6.56x56 F242
6x59 6.59x59 Y245