PDB
9IYA
Resolution
3.0 Å
Released
Jan. 1, 2025
Receptor
GPR55
Class
A
Species
Homo sapiens
Ligand
ONO-9710531
Function
Inverse agonist
Reference
—

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Ligand Amino Acid Generic Number Segment Interaction Type
ONO-9710531 F102 3.33x33 TM3 hydrophobic
ONO-9710531 Y106 3.37x37 TM3 polar (hydrogen bond)
ONO-9710531 Y106 3.37x37 TM3 Van der Waals
ONO-9710531 G152 4.56x56 TM4 Van der Waals
ONO-9710531 G152 4.56x56 TM4 polar (hydrogen bond with backbone)
ONO-9710531 S153 4.57x57 TM4 Van der Waals
ONO-9710531 P155 ECL2 polar (hydrogen bond with backbone)
ONO-9710531 P155 ECL2 Van der Waals
ONO-9710531 I156 ECL2 Van der Waals
ONO-9710531 I156 ECL2 polar (hydrogen bond with backbone)
ONO-9710531 H170 45.52x52 ECL2 Van der Waals
ONO-9710531 H170 45.52x52 ECL2 aromatic (face-to-edge)
ONO-9710531 M172 ECL2 hydrophobic
ONO-9710531 M172 ECL2 Van der Waals
ONO-9710531 T176 ECL2 Van der Waals
ONO-9710531 W177 ECL2 hydrophobic
ONO-9710531 W177 ECL2 Van der Waals
ONO-9710531 F182 5.39x40 TM5 Van der Waals
ONO-9710531 F182 5.39x40 TM5 hydrophobic
ONO-9710531 L185 5.42x43 TM5 hydrophobic
ONO-9710531 L185 5.42x43 TM5 Van der Waals
ONO-9710531 E186 5.43x44 TM5 Van der Waals
ONO-9710531 F246 6.55x55 TM6 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 W P D Y ICL1ECL1 Q S P ECL1ICL2 P L L V S H L R ICL2ECL2 K Y M C F H N M S D D T W ECL2ICL3 T Q D W V Q ICL3ECL3 F I V ECL3N-term M S Q Q N T S G D C L N-termC-term V Q L V L Q D T T I S R G C-term F D G V N E L M K T L Q F A V H I P T F V L G L L L N L L A I H G F S T F L K N R A A T S I Y M I N L A V F D L L L V L S L P F K M V L S Q V F P S L C T L V E C L Y F V S M Y G S V F T I C F I S M D R F L A I R Y S P R K I F G I C C T I W V L V W T G S I P I Y S F H G K V E S A K V F F P L E V F G F L L P M G I M G F C C S R S I H I L L G R R D H Q K A C I Y S I A A S L A V F V V S F L P V H L G F F L Q F L V R N S E C R A K Q S I S F F L Q L S M C F S N V N C C L D V F C Y Y F V I K E I R A R F R M N H R P S
Helix box plot — Download: PNG | SVG L N L L L G L V F T P I H V A F Q L T K 1 I N L A V F D L L L V L S L P F K M V L 2 F C I T F V S G Y M S V F Y L C E V L T 3 I F G I C C T I W V L V W T G S I P I 4 C C F G M I G M P L L F G F V E L P F F V 5 A A S L A V F V V S F L P V H L G F F L 6 F V D L C C N V N S F C M S L Q L F F 7

GPCRdb(A)
GPCRdb(A)
GPR55
TM3
3x33 3.33x33 F102
3x37 3.37x37 Y106
TM4
4x56 4.56x56 G152
4x57 4.57x57 S153
ECL2
45x52 45.52x52 H170
TM5
5x40 5.39x40 F182
5x43 5.42x43 L185
5x44 5.43x44 E186
TM6
6x55 6.55x55 F246