PDB
9LKD
Resolution
3.6 Å
Released
Jan. 21, 2026
Receptor
OR5V1
Class
O2
Species
Mus musculus
Ligand
PL45
Function
Agonist
Reference
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Ligand Amino Acid Generic Number Segment Interaction Type
PL45 Q80 2.60x60 TM2 polar (hydrogen bond)
PL45 Q80 2.60x60 TM2 Van der Waals
PL45 H84 ECL1 Van der Waals
PL45 L101 3.29x29 TM3 hydrophobic
PL45 I105 3.33x33 TM3 Van der Waals
PL45 I105 3.33x33 TM3 hydrophobic
PL45 V108 3.36x36 TM3 hydrophobic

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Snake plot — Download: PNG | SVG
ICL1 S H L H ICL1ECL1 E K K I I ECL1ICL2 P L R Y S F I M ICL2ECL2 L P F C G N N Q I N Y F F C D I P P L L I L S C G D ECL2ICL3 R ICL3ECL3 P I S S Y ECL3N-term M E G K N Q T A P S E F I I L G N-termC-term P P V F S S D I C-term F D H L N E L Q Y L L F T I F F L T Y I C T L G G N V F I I V V T I A D T P M Y Y F L G N L A L I D I C Y T T T N V P Q M M V H L L S S Y G G C V T Q L F A F I F F V G S E C L L L A A M A Y D R Y I A I C K N K A L C S W L A A S C W T G G F L N S V L H T V L T F H T S L N E L A L L S I G I L I G W T P F L C V I L S Y L Y I I S T I L R I S S E G R H K A F S T C A S H L L I V I L Y Y G S A I F T Y V R S L E K D R L I S V L Y S V V T P M L N P V I Y T L R N K A V K K W Q D I K E A I G R
Helix box plot — Download: PNG | SVG V N G G L T C I Y T L F F I T F L L Y Q 1 G N L A L I D I C Y T T T N V P Q M M V 2 A A L L L C E S G V F F I F A F L Q T V 3 C S W L A A S C W T G G F L N S V L H T 4 Y S L I V C L F P T W G I L I G I S L L A 5 A S H L L I V I L Y Y G S A I F T Y V R 6 V P N L M P T V V S Y L V S I L R D K 7

GPCRdb(A)
GPCRdb(A)
OR5V1
TM2
2x60 2.60x60 Q80
TM3
3x29 3.29x29 L101
3x33 3.33x33 I105
3x36 3.36x36 V108