| Ligand | Amino Acid | Generic Number | Segment | Interaction Type |
|---|---|---|---|---|
| Agmatine | D112 | 3.32x32 | TM3 | polar (charge-assisted hydrogen bond) |
| Agmatine | L113 | 3.33x33 | TM3 | Van der Waals |
| Agmatine | L113 | 3.33x33 | TM3 | hydrophobic |
| Agmatine | T116 | 3.36x36 | TM3 | Van der Waals |
| Agmatine | T116 | 3.36x36 | TM3 | polar (hydrogen bond) |
| Agmatine | S117 | 3.37x37 | TM3 | polar (hydrogen bond) |
| Agmatine | S117 | 3.37x37 | TM3 | Van der Waals |
| Agmatine | L192 | 45.52x52 | ECL2 | Van der Waals |
| Agmatine | L192 | 45.52x52 | ECL2 | polar (hydrogen bond with backbone) |
| Agmatine | Y193 | ECL2 | Van der Waals | |
| Agmatine | Y193 | ECL2 | polar (hydrogen bond) | |
| Agmatine | D202 | 5.42x43 | TM5 | polar (charge-assisted hydrogen bond) |
| Agmatine | T206 | 5.46x461 | TM5 | polar (hydrogen bond) |
| Agmatine | T206 | 5.46x461 | TM5 | Van der Waals |
| Agmatine | W269 | 6.48x48 | TM6 | hydrophobic |
| Agmatine | W269 | 6.48x48 | TM6 | Van der Waals |
| Agmatine | F272 | 6.51x51 | TM6 | hydrophobic |
| Agmatine | F272 | 6.51x51 | TM6 | Van der Waals |
| Agmatine | F273 | 6.52x52 | TM6 | Van der Waals |
| Agmatine | D279 | 6.58x58 | TM6 | polar (charge-assisted hydrogen bond) |
| Agmatine | F284 | ECL3 | Van der Waals | |
| Agmatine | F291 | 7.35x34 | TM7 | Van der Waals |
| Agmatine | F291 | 7.35x34 | TM7 | hydrophobic |
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|
GPCRdb(A)
|
GPCRdb(A)
|
taar13d
|
|---|---|---|
| TM3 | ||
| 3x32 | 3.32x32 | D112 |
| 3x33 | 3.33x33 | L113 |
| 3x36 | 3.36x36 | T116 |
| 3x37 | 3.37x37 | S117 |
| ECL2 | ||
| 45x52 | 45.52x52 | L192 |
| TM5 | ||
| 5x43 | 5.42x43 | D202 |
| 5x461 | 5.46x461 | T206 |
| TM6 | ||
| 6x48 | 6.48x48 | W269 |
| 6x51 | 6.51x51 | F272 |
| 6x52 | 6.52x52 | F273 |
| 6x58 | 6.58x58 | D279 |
| TM7 | ||
| 7x34 | 7.35x34 | F291 |