PDB
9W45
Resolution
3.2 Å
Released
March 4, 2026
Receptor
OR1D2
Class
O2
Species
Mus musculus
Ligand
Function
Methyl cinnamate
Agonist
Reference
—

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file
Download list in excel
Ligand Amino Acid Generic Number Segment Interaction Type
Methyl cinnamate V105 3.33x33 TM3 Van der Waals
Methyl cinnamate V108 3.36x36 TM3 Van der Waals
Methyl cinnamate Y155 4.56x56 TM4 Van der Waals
Methyl cinnamate G203 5.43x43 TM5 Van der Waals
Methyl cinnamate C204 5.44x44 TM5 Van der Waals
Methyl cinnamate F207 5.47x47 TM5 aromatic (edge-to-face)
Methyl cinnamate F207 5.47x47 TM5 hydrophobic
Methyl cinnamate L255 6.51x51 TM6 hydrophobic
Methyl cinnamate Y259 6.55x55 TM6 hydrophobic
Methyl cinnamate L260 6.56x56 TM6 hydrophobic
Methyl cinnamate Y277 7.41x40 TM7 Van der Waals

NGL is a WebGL based 3D viewer powered by MMTF.

Download PDB file

Snake plot — Download: PNG | SVG
ICL1 S H L H ICL1ECL1 Q N K A I ECL1ICL2 P L H Y T T A M ICL2ECL2 R V T F C G S R K I H Y I F C E M Y V L L R L A C S N ECL2ICL3 I P ICL3ECL3 K P L H T Y ECL3N-term M D G G N Q S G D S E F L L L G L S E N-term V P E H Q R I L F W T F L S M Y L V T V V G N V L I I L A I G S D T P M Y F F L A N L S F T D L F F V T N T I P K M L V S L Q S S Y P G C L T Q L F F L V S L V A L D N L I L A V M A Y D R Y V A I C H S P K L C I L L L I L C W A L S I L Y G L I H T L L M T T H I N H M M L I A T G C F V F L V P F G F M I M S Y I C I V R A I L K S A S N K Y K A F S T C A S H L A V V A L F Y G T L C M V Y L S M K D S V A T V M Y A V V T P M M N P F I Y S L R N K D L G R P L Q M H G A L L R K K L T
Helix box plot — Download: PNG | SVG V N G V V T V L Y M S L F T W F L I R Q 1 A N L S F T D L F F V T N T I P K M L V 2 V A L I L N D L A V L S V L F F L Q T L 3 C I L L L I L C W A L S I L Y G L I H T 4 Y S M I M F G F P V L F V F C G T A I L 5 A S H L A V V A L F Y G T L C M V Y L 6 F P N M M P T V V A Y M V T A V S D K 7

GPCRdb(A)
GPCRdb(A)
OR1D2
TM3
3x33 3.33x33 V105
3x36 3.36x36 V108
TM4
4x56 4.56x56 Y155
TM5
5x43 5.43x43 G203
5x44 5.44x44 C204
5x47 5.47x47 F207
TM6
6x51 6.51x51 L255
6x55 6.55x55 Y259
6x56 6.56x56 L260
TM7
7x40 7.41x40 Y277